(data stored in SCRATCH zone)

SWISSPROT: Q0SKI5_RHOJR

ID   Q0SKI5_RHOJR            Unreviewed;       381 AA.
AC   Q0SKI5;
DT   05-SEP-2006, integrated into UniProtKB/TrEMBL.
DT   05-SEP-2006, sequence version 1.
DT   07-JUN-2017, entry version 79.
DE   SubName: Full=Probable sigma factor, includes region 2 {ECO:0000313|EMBL:ABG91951.1};
GN   OrderedLocusNames=RHA1_ro00115 {ECO:0000313|EMBL:ABG91951.1};
OS   Rhodococcus jostii (strain RHA1).
OC   Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae;
OC   Rhodococcus.
OX   NCBI_TaxID=101510 {ECO:0000313|EMBL:ABG91951.1, ECO:0000313|Proteomes:UP000008710};
RN   [1] {ECO:0000313|Proteomes:UP000008710}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RHA1 {ECO:0000313|Proteomes:UP000008710};
RX   PubMed=17030794; DOI=10.1073/pnas.0607048103;
RA   McLeod M.P., Warren R.L., Hsiao W.W.L., Araki N., Myhre M.,
RA   Fernandes C., Miyazawa D., Wong W., Lillquist A.L., Wang D.,
RA   Dosanjh M., Hara H., Petrescu A., Morin R.D., Yang G., Stott J.M.,
RA   Schein J.E., Shin H., Smailus D., Siddiqui A.S., Marra M.A.,
RA   Jones S.J.M., Holt R., Brinkman F.S.L., Miyauchi K., Fukuda M.,
RA   Davies J.E., Mohn W.W., Eltis L.D.;
RT   "The complete genome of Rhodococcus sp. RHA1 provides insights into a
RT   catabolic powerhouse.";
RL   Proc. Natl. Acad. Sci. U.S.A. 103:15582-15587(2006).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|SAAS:SAAS00565917}.
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DR   EMBL; CP000431; ABG91951.1; -; Genomic_DNA.
DR   RefSeq; WP_011593438.1; NC_008268.1.
DR   ProteinModelPortal; Q0SKI5; -.
DR   STRING; 101510.RHA1_ro00115; -.
DR   PRIDE; Q0SKI5; -.
DR   EnsemblBacteria; ABG91951; ABG91951; RHA1_ro00115.
DR   GeneID; 4217650; -.
DR   KEGG; rha:RHA1_ro00115; -.
DR   PATRIC; fig|101510.16.peg.139; -.
DR   eggNOG; ENOG4105CHP; Bacteria.
DR   eggNOG; COG4941; LUCA.
DR   HOGENOM; HOG000152991; -.
DR   OMA; RLYFLCA; -.
DR   OrthoDB; POG091H08O2; -.
DR   BioCyc; RJOS101510:GJJ1-115-MONOMER; -.
DR   Proteomes; UP000008710; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q0SKI5.
DR   SWISS-2DPAGE; Q0SKI5.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008710};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008710};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN        6     70       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN       98    148       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
SQ   SEQUENCE   381 AA;  41588 MW;  EEA19D60777AE3B4 CRC64;
     MDDALLRTLT PTVIGVLVRR GADFAAAEDA VQDALIEAVR AWPDDPPRDP RGWLVTVAWR
     KFLDATRSDS SRRYREARVD AEPSPEPGEA VDDTLQLYFL CAHPSLTPAS AVALTLRAVS
     GLTTRQIAQA YLVPESTMAQ RISRAKRTVS DVRFNQPGDV ATVLRVLYLV YNEGYGGSID
     LAAEAIRLTR QLAAKTDHEE VAGLLALMLL HHARRPARTR TDGSLVPLAE QDRSLWDTRL
     IAEGVVVLQS ALDRDRLGEF QAQAAIAALH ADARTSAETD WVQIVEWYDE LVRLTDSPVA
     RLNRAVAVGE ADGARAGLAA LSGLDPTLPR YSAAAAYLHE RDGDPVTAAQ LYAEAARSAP
     NLPERDHLTR QAARLNAQLR S
//

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