(data stored in SCRATCH zone)

SWISSPROT: Q13DP6_RHOPS

ID   Q13DP6_RHOPS            Unreviewed;       159 AA.
AC   Q13DP6;
DT   31-OCT-2006, integrated into UniProtKB/TrEMBL.
DT   31-OCT-2006, sequence version 1.
DT   08-MAY-2019, entry version 68.
DE   RecName: Full=Endolytic peptidoglycan transglycosylase RlpA {ECO:0000256|HAMAP-Rule:MF_02071};
DE            EC=4.2.2.- {ECO:0000256|HAMAP-Rule:MF_02071};
GN   Name=rlpA {ECO:0000256|HAMAP-Rule:MF_02071};
GN   OrderedLocusNames=RPD_0555 {ECO:0000313|EMBL:ABE37793.1};
OS   Rhodopseudomonas palustris (strain BisB5).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Bradyrhizobiaceae; Rhodopseudomonas.
OX   NCBI_TaxID=316057 {ECO:0000313|EMBL:ABE37793.1, ECO:0000313|Proteomes:UP000001818};
RN   [1] {ECO:0000313|EMBL:ABE37793.1, ECO:0000313|Proteomes:UP000001818}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=BisB5 {ECO:0000313|EMBL:ABE37793.1,
RC   ECO:0000313|Proteomes:UP000001818};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA   Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Pelletier D.A., Kyrpides N.,
RA   Lykidis A., Oda Y., Harwood C.S., Richardson P.;
RT   "Complete sequence of Rhodopseudomonas palustris BisB5.";
RL   Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Lytic transglycosylase with a strong preference for
CC       naked glycan strands that lack stem peptides. {ECO:0000256|HAMAP-
CC       Rule:MF_02071}.
CC   -!- SIMILARITY: Belongs to the RlpA family. {ECO:0000256|HAMAP-
CC       Rule:MF_02071, ECO:0000256|RuleBase:RU003495}.
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DR   EMBL; CP000283; ABE37793.1; -; Genomic_DNA.
DR   RefSeq; WP_011500980.1; NC_007958.1.
DR   STRING; 316057.RPD_0555; -.
DR   EnsemblBacteria; ABE37793; ABE37793; RPD_0555.
DR   KEGG; rpd:RPD_0555; -.
DR   eggNOG; ENOG4105K6T; Bacteria.
DR   eggNOG; COG0797; LUCA.
DR   HOGENOM; HOG000254768; -.
DR   KO; K03642; -.
DR   OMA; TAMAMIV; -.
DR   OrthoDB; 2027419at2; -.
DR   BioCyc; RPAL316057:RPD_RS02845-MONOMER; -.
DR   Proteomes; UP000001818; Chromosome.
DR   GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW.
DR   GO; GO:0008932; F:lytic endotransglycosylase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR   GO; GO:0000270; P:peptidoglycan metabolic process; IEA:UniProtKB-UniRule.
DR   Gene3D; 2.40.40.10; -; 1.
DR   HAMAP; MF_02071; RlpA; 1.
DR   InterPro; IPR034718; RlpA.
DR   InterPro; IPR009009; RlpA-like_DPBB.
DR   InterPro; IPR036908; RlpA-like_sf.
DR   InterPro; IPR012997; RplA.
DR   Pfam; PF03330; DPBB_1; 1.
DR   SUPFAM; SSF50685; SSF50685; 1.
DR   TIGRFAMs; TIGR00413; rlpA; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q13DP6.
DR   SWISS-2DPAGE; Q13DP6.
KW   Cell wall biogenesis/degradation {ECO:0000256|HAMAP-Rule:MF_02071};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001818};
KW   Lipoprotein {ECO:0000313|EMBL:ABE37793.1};
KW   Lyase {ECO:0000256|HAMAP-Rule:MF_02071}.
FT   DOMAIN       71    154       DPBB_1. {ECO:0000259|Pfam:PF03330}.
SQ   SEQUENCE   159 AA;  16685 MW;  6B5597804EA3B7C5 CRC64;
     MTDTKKSPPG LVTRPRTAFA LIAATVLMSG AAATEASARS KRHHHHAHHN NAQNDWRDAN
     AALGSGGRSF SGVASYYGNE SGNRTASGQR MNANAMTAAH RSLPFGTKLR VTHGGRSVVV
     TVNDRGPFIR GRVLDLSTGA ARAIGLTSRG VGRVVAEVM
//

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