(data stored in SCRATCH zone)

SWISSPROT: Q13E92_RHOPS

ID   Q13E92_RHOPS            Unreviewed;       426 AA.
AC   Q13E92;
DT   31-OCT-2006, integrated into UniProtKB/TrEMBL.
DT   31-OCT-2006, sequence version 1.
DT   08-MAY-2019, entry version 76.
DE   SubName: Full=Ribosomal large subunit pseudouridine synthase D {ECO:0000313|EMBL:ABE37597.1};
DE            EC=5.4.99.- {ECO:0000313|EMBL:ABE37597.1};
GN   OrderedLocusNames=RPD_0359 {ECO:0000313|EMBL:ABE37597.1};
OS   Rhodopseudomonas palustris (strain BisB5).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Bradyrhizobiaceae; Rhodopseudomonas.
OX   NCBI_TaxID=316057 {ECO:0000313|EMBL:ABE37597.1, ECO:0000313|Proteomes:UP000001818};
RN   [1] {ECO:0000313|EMBL:ABE37597.1, ECO:0000313|Proteomes:UP000001818}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=BisB5 {ECO:0000313|EMBL:ABE37597.1,
RC   ECO:0000313|Proteomes:UP000001818};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA   Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Pelletier D.A., Kyrpides N.,
RA   Lykidis A., Oda Y., Harwood C.S., Richardson P.;
RT   "Complete sequence of Rhodopseudomonas palustris BisB5.";
RL   Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the pseudouridine synthase RluA family.
CC       {ECO:0000256|SAAS:SAAS01177972}.
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DR   EMBL; CP000283; ABE37597.1; -; Genomic_DNA.
DR   STRING; 316057.RPD_0359; -.
DR   EnsemblBacteria; ABE37597; ABE37597; RPD_0359.
DR   KEGG; rpd:RPD_0359; -.
DR   eggNOG; ENOG4105C34; Bacteria.
DR   eggNOG; COG0564; LUCA.
DR   HOGENOM; HOG000275919; -.
DR   KO; K06180; -.
DR   OMA; AHPSPGW; -.
DR   Proteomes; UP000001818; Chromosome.
DR   GO; GO:0009982; F:pseudouridine synthase activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro.
DR   CDD; cd02869; PseudoU_synth_RluCD_like; 1.
DR   CDD; cd00165; S4; 1.
DR   Gene3D; 3.10.290.10; -; 1.
DR   InterPro; IPR020103; PsdUridine_synth_cat_dom_sf.
DR   InterPro; IPR006225; PsdUridine_synth_RluC/D.
DR   InterPro; IPR006224; PsdUridine_synth_RluC/D_CS.
DR   InterPro; IPR006145; PsdUridine_synth_RsuA/RluA.
DR   InterPro; IPR002942; S4_RNA-bd.
DR   InterPro; IPR036986; S4_RNA-bd_sf.
DR   Pfam; PF00849; PseudoU_synth_2; 1.
DR   Pfam; PF01479; S4; 1.
DR   SMART; SM00363; S4; 1.
DR   SUPFAM; SSF55120; SSF55120; 1.
DR   TIGRFAMs; TIGR00005; rluA_subfam; 1.
DR   PROSITE; PS01129; PSI_RLU; 1.
DR   PROSITE; PS50889; S4; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q13E92.
DR   SWISS-2DPAGE; Q13E92.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001818};
KW   Isomerase {ECO:0000256|SAAS:SAAS00999454,
KW   ECO:0000313|EMBL:ABE37597.1};
KW   RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182,
KW   ECO:0000256|SAAS:SAAS00999393}.
FT   DOMAIN      112    181       S4 RNA-binding. {ECO:0000259|PROSITE:
FT                                PS50889}.
SQ   SEQUENCE   426 AA;  45670 MW;  171A016A943B58C8 CRC64;
     MVAGGGGGDD ARPLRQPQRG LGGDRNASLG AEKLIADGDE NRRERQRRGQ ARDHHHPPHP
     RKQRGLFGGR FGQGGFGHAM LGFGSVFLEG SIVNDSSGHL LEVVVAGDEG SPRLDRVLAT
     RCPALSRSRL KALILDGRVA IRGAPVRDPA YHAASGETIT IDVPPPVAPE PAGEAIALEI
     VHEDDDIIVI DKPRGLVVHP AAGHETGTLV NALIAHCGES LSGIGGVRRP GIVHRLDKDT
     TGLMVAAKND RAHQSLSAQF ADHGRTGELR RGYYAFVWGA PNRIRGTIDA PIDRHPHARE
     KMAVRDGGRE AITHWEVLET FTGRSGGEIV SLIACQLETG RTHQIRVHLA HIGHPLLGDD
     VYGPHFKTKA SQLRPDARAA LTDLGRQALH AYLLVLEHPS TGEVVAWESG LPADLKRLKA
     ALTATE
//

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