(data stored in SCRATCH zone)

SWISSPROT: Q13EL6_RHOPS

ID   Q13EL6_RHOPS            Unreviewed;       540 AA.
AC   Q13EL6;
DT   31-OCT-2006, integrated into UniProtKB/TrEMBL.
DT   31-OCT-2006, sequence version 1.
DT   08-MAY-2019, entry version 90.
DE   RecName: Full=Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945};
GN   Name=nusA {ECO:0000256|HAMAP-Rule:MF_00945};
GN   OrderedLocusNames=RPD_0233 {ECO:0000313|EMBL:ABE37473.1};
OS   Rhodopseudomonas palustris (strain BisB5).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Bradyrhizobiaceae; Rhodopseudomonas.
OX   NCBI_TaxID=316057 {ECO:0000313|EMBL:ABE37473.1, ECO:0000313|Proteomes:UP000001818};
RN   [1] {ECO:0000313|EMBL:ABE37473.1, ECO:0000313|Proteomes:UP000001818}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=BisB5 {ECO:0000313|EMBL:ABE37473.1,
RC   ECO:0000313|Proteomes:UP000001818};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA   Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Pelletier D.A., Kyrpides N.,
RA   Lykidis A., Oda Y., Harwood C.S., Richardson P.;
RT   "Complete sequence of Rhodopseudomonas palustris BisB5.";
RL   Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Participates in both transcription termination and
CC       antitermination. {ECO:0000256|HAMAP-Rule:MF_00945}.
CC   -!- SUBUNIT: Monomer. Binds directly to the core enzyme of the DNA-
CC       dependent RNA polymerase and to nascent RNA. {ECO:0000256|HAMAP-
CC       Rule:MF_00945}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00945}.
CC   -!- SIMILARITY: Belongs to the NusA family. {ECO:0000256|HAMAP-
CC       Rule:MF_00945}.
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DR   EMBL; CP000283; ABE37473.1; -; Genomic_DNA.
DR   RefSeq; WP_011500663.1; NC_007958.1.
DR   STRING; 316057.RPD_0233; -.
DR   EnsemblBacteria; ABE37473; ABE37473; RPD_0233.
DR   KEGG; rpd:RPD_0233; -.
DR   eggNOG; ENOG4105CHV; Bacteria.
DR   eggNOG; COG0195; LUCA.
DR   HOGENOM; HOG000006394; -.
DR   KO; K02600; -.
DR   OMA; SRTTPKM; -.
DR   OrthoDB; 384865at2; -.
DR   BioCyc; RPAL316057:RPD_RS01180-MONOMER; -.
DR   Proteomes; UP000001818; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006353; P:DNA-templated transcription, termination; IEA:UniProtKB-UniRule.
DR   GO; GO:0031564; P:transcription antitermination; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.30.1480.10; -; 1.
DR   Gene3D; 3.30.300.20; -; 2.
DR   HAMAP; MF_00945_B; NusA_B; 1.
DR   InterPro; IPR010995; DNA_repair_Rad51/TF_NusA_a-hlx.
DR   InterPro; IPR004087; KH_dom.
DR   InterPro; IPR015946; KH_dom-like_a/b.
DR   InterPro; IPR025249; KH_dom_NusA-like.
DR   InterPro; IPR009019; KH_sf_prok-type.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR030842; NusA_bac.
DR   InterPro; IPR036555; NusA_N_sf.
DR   InterPro; IPR022967; S1_dom.
DR   InterPro; IPR003029; S1_domain.
DR   InterPro; IPR013735; TF_NusA_N.
DR   InterPro; IPR010214; Tscrpt_termin_fac_NusA_C_rpt.
DR   InterPro; IPR010213; Tscrpt_termination_fac_NusA.
DR   PANTHER; PTHR22648; PTHR22648; 1.
DR   Pfam; PF13184; KH_5; 1.
DR   Pfam; PF08529; NusA_N; 1.
DR   Pfam; PF00575; S1; 1.
DR   SMART; SM00322; KH; 2.
DR   SMART; SM00316; S1; 1.
DR   SUPFAM; SSF47794; SSF47794; 2.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   SUPFAM; SSF54814; SSF54814; 2.
DR   SUPFAM; SSF69705; SSF69705; 1.
DR   TIGRFAMs; TIGR01953; NusA; 1.
DR   TIGRFAMs; TIGR01954; nusA_Cterm_rpt; 1.
DR   PROSITE; PS50126; S1; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q13EL6.
DR   SWISS-2DPAGE; Q13EL6.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001818};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00945};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_00945};
KW   Transcription {ECO:0000256|HAMAP-Rule:MF_00945};
KW   Transcription antitermination {ECO:0000256|HAMAP-Rule:MF_00945};
KW   Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00945};
KW   Transcription termination {ECO:0000256|HAMAP-Rule:MF_00945}.
FT   DOMAIN      140    204       S1 motif. {ECO:0000259|PROSITE:PS50126}.
SQ   SEQUENCE   540 AA;  59436 MW;  69D399FB4D346554 CRC64;
     MAVSANKLEL LQIADAVARE KSIDRGIVIA AMEDAIAKAA RARYGSETDV HAEIDAKKGE
     LRLSRHMLVV DKVENAANQI SLKDAQRANP GAQIGDTIAD TLPPLEYGRI AAQSAKQVIV
     QKVREAERDR QYMEFKDRIG DVVNGVVKRV EYGSVIVDLG RGEAIVRRDE MLPRESFRNG
     DRVRAYIFDV RRETRGPQIF LSRTHPQFMA KLFQQEVPEI YDGIVEIKAV ARDPGSRAKI
     GVVSRDSSVD PVGACVGMRG SRVQAVVNEL QGEKIDIIPW SPDIATFVVN ALAPAEVSKV
     VIDEDRERIE VVVPDTNNQL SLAIGRRGQN VRLASQLTGW DIDILTETEE SERRQADFEN
     STRVFMEALN VDEVVGQLLA SEGFTSVEEL AMVDIRELAS IEGFDEETAT ELQARAAEYL
     DRVETELEAR RQELGVEDAL KDVPGVTSKM LVKLGEGDVK TVEDLAGCAT DDLVGWTERK
     EGAEPVKYAG ILDGVEMTRD DAEHLIMQAR VKAGWITEEE LAQTADKGED AGAETEGAAE
//

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