(data stored in SCRATCH zone)

SWISSPROT: Q13I08_PARXL

ID   Q13I08_PARXL            Unreviewed;       692 AA.
AC   Q13I08;
DT   22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT   22-AUG-2006, sequence version 1.
DT   08-MAY-2019, entry version 69.
DE   SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:ABE36281.1};
GN   ORFNames=Bxe_C0374 {ECO:0000313|EMBL:ABE36281.1};
OS   Paraburkholderia xenovorans (strain LB400).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=266265 {ECO:0000313|EMBL:ABE36281.1, ECO:0000313|Proteomes:UP000001817};
RN   [1] {ECO:0000313|EMBL:ABE36281.1, ECO:0000313|Proteomes:UP000001817}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=LB400 {ECO:0000313|EMBL:ABE36281.1,
RC   ECO:0000313|Proteomes:UP000001817};
RX   PubMed=17030797; DOI=10.1073/pnas.0606924103;
RA   Chain P.S., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L.,
RA   Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M.,
RA   Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A.,
RA   Marx C.J., Parnell J.J., Ramette A., Richardson P., Seeger M.,
RA   Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B.,
RA   Tiedje J.M.;
RT   "Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp
RT   genome shaped for versatility.";
RL   Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP000272; ABE36281.1; -; Genomic_DNA.
DR   RefSeq; WP_011493541.1; NZ_CP008761.1.
DR   STRING; 266265.Bxe_C0374; -.
DR   EnsemblBacteria; ABE36281; ABE36281; Bxe_C0374.
DR   GeneID; 4009888; -.
DR   KEGG; bxb:DR64_8066; -.
DR   KEGG; bxe:Bxe_C0374; -.
DR   PATRIC; fig|266265.5.peg.8144; -.
DR   eggNOG; ENOG4105DA4; Bacteria.
DR   eggNOG; COG1138; LUCA.
DR   HOGENOM; HOG000274659; -.
DR   KO; K02198; -.
DR   OMA; MMTEAGI; -.
DR   OrthoDB; 213184at2; -.
DR   BioCyc; BXEN266265:BXE_RS38455-MONOMER; -.
DR   Proteomes; UP000001817; Chromosome 3.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0020037; F:heme binding; IEA:InterPro.
DR   GO; GO:0015232; F:heme transporter activity; IEA:InterPro.
DR   GO; GO:0017004; P:cytochrome complex assembly; IEA:InterPro.
DR   InterPro; IPR032523; CcmF_C.
DR   InterPro; IPR002541; Cyt_c_assembly.
DR   InterPro; IPR003567; Cyt_c_biogenesis.
DR   InterPro; IPR003568; Cyt_c_biogenesis_CcmF.
DR   Pfam; PF16327; CcmF_C; 1.
DR   Pfam; PF01578; Cytochrom_C_asm; 1.
DR   PRINTS; PR01410; CCBIOGENESIS.
DR   PRINTS; PR01411; CCMFBIOGNSIS.
DR   TIGRFAMs; TIGR00353; nrfE; 1.
PE   4: Predicted;
DR   PRODOM; Q13I08.
DR   SWISS-2DPAGE; Q13I08.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001817};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001817};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM      6     26       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM     47     72       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM     96    114       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    121    142       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    177    197       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    209    229       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    249    265       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    277    305       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    311    331       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    352    373       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    393    413       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    425    443       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    489    510       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    615    635       Helical. {ECO:0000256|SAM:Phobius}.
FT   DOMAIN       89    295       Cytochrom_C_asm. {ECO:0000259|Pfam:
FT                                PF01578}.
FT   DOMAIN      315    637       CcmF_C. {ECO:0000259|Pfam:PF16327}.
SQ   SEQUENCE   692 AA;  75503 MW;  D41EA7542FF337B1 CRC64;
     MIPEIGHFAL ILALLLALTT GVLPVIGVQR GIDGWIRLAW PAARAQFAFV AIAFGCLSWS
     FLINDFSVLY VVENSNSALP AVYRFTAVWG GHEGSLLLWV LLLTLWMVAV TCFSKQLPVT
     MVATVLGVMS WIASGFLLFM LFTSNPFSRL IPQSMEGRDL NPLLQDPGMV IHPPVLYAGY
     VGFSVAFAFA IAALLSGRLD AAWARWSRPW TTAAWVFLTL GIMLGSGWAY YELGWGGWWF
     WDPVENASFM PWLAGTALIH SLAVTEKRGS FRSWTALLAI CAFSLSLLGT FLVRSGVITS
     VHAFASDPTR GVFILGFLAL VVGGALLLFA WRAPQIGLGA GFEPVSREAL LLSNNVLLMV
     AAASVLLGTL YPMVLDALGL DKISVGPPYF DSVFVPLMTP AIFLMGVGPL ARWKAARVPD
     LAARLRWAAA VSVVTALALP FTLGSWRPLV SLGLLLATWS FATVAVSMRE RIGSQQGRPL
     LRFRRVPRAS YGMWLAHAGI GVFIVGVTLV KGYESERDVP MRRGQTVEVG GYQFRFDGVR
     DVDGPNYRAT RASIAVSREG RPVTTLYPEK RLFLVQKMPM TEAAIDHGVL RDLYVAMGEP
     IGEEAWTLRI QIKPFVRWIW AGCLLMALGG MLAASDRRYR LFPGRRVLQM NEAARSAGVR
     PLAANEIRQT GAIGAPGVIA AAPHHPVNED RG
//

If you have problems or comments...

PBIL Back to PBIL home page