(data stored in SCRATCH zone)

SWISSPROT: Q13IZ7_PARXL

ID   Q13IZ7_PARXL            Unreviewed;       847 AA.
AC   Q13IZ7;
DT   22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT   22-AUG-2006, sequence version 1.
DT   08-MAY-2019, entry version 86.
DE   SubName: Full=Putative diguanylate cyclase(GGDEF)/ phosphodiesterase(EAL) with PAS/PAC and GAF sensors {ECO:0000313|EMBL:ABE35942.1};
GN   ORFNames=Bxe_C0015 {ECO:0000313|EMBL:ABE35942.1};
OS   Paraburkholderia xenovorans (strain LB400).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=266265 {ECO:0000313|EMBL:ABE35942.1, ECO:0000313|Proteomes:UP000001817};
RN   [1] {ECO:0000313|EMBL:ABE35942.1, ECO:0000313|Proteomes:UP000001817}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=LB400 {ECO:0000313|EMBL:ABE35942.1,
RC   ECO:0000313|Proteomes:UP000001817};
RX   PubMed=17030797; DOI=10.1073/pnas.0606924103;
RA   Chain P.S., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L.,
RA   Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M.,
RA   Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A.,
RA   Marx C.J., Parnell J.J., Ramette A., Richardson P., Seeger M.,
RA   Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B.,
RA   Tiedje J.M.;
RT   "Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp
RT   genome shaped for versatility.";
RL   Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP000272; ABE35942.1; -; Genomic_DNA.
DR   RefSeq; WP_011493202.1; NZ_CP008761.1.
DR   STRING; 266265.Bxe_C0015; -.
DR   EnsemblBacteria; ABE35942; ABE35942; Bxe_C0015.
DR   GeneID; 4009524; -.
DR   KEGG; bxb:DR64_8410; -.
DR   KEGG; bxe:Bxe_C0015; -.
DR   PATRIC; fig|266265.5.peg.7793; -.
DR   eggNOG; ENOG4105BZU; Bacteria.
DR   eggNOG; ENOG410XNMH; LUCA.
DR   HOGENOM; HOG000136246; -.
DR   OMA; YPDNATD; -.
DR   OrthoDB; 1635706at2; -.
DR   BioCyc; BXEN266265:BXE_RS36825-MONOMER; -.
DR   Proteomes; UP000001817; Chromosome 3.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   CDD; cd01948; EAL; 1.
DR   CDD; cd01949; GGDEF; 1.
DR   CDD; cd00130; PAS; 2.
DR   Gene3D; 3.20.20.450; -; 1.
DR   Gene3D; 3.30.450.40; -; 1.
DR   InterPro; IPR012226; Diguanyl_cyclase/Pdiesterase.
DR   InterPro; IPR001633; EAL_dom.
DR   InterPro; IPR035919; EAL_sf.
DR   InterPro; IPR003018; GAF.
DR   InterPro; IPR029016; GAF-like_dom_sf.
DR   InterPro; IPR000160; GGDEF_dom.
DR   InterPro; IPR029787; Nucleotide_cyclase.
DR   InterPro; IPR001610; PAC.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR000700; PAS-assoc_C.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013767; PAS_fold.
DR   Pfam; PF00563; EAL; 1.
DR   Pfam; PF13185; GAF_2; 1.
DR   Pfam; PF00990; GGDEF; 1.
DR   Pfam; PF00989; PAS; 1.
DR   Pfam; PF13426; PAS_9; 1.
DR   PIRSF; PIRSF005925; Dos; 2.
DR   SMART; SM00052; EAL; 1.
DR   SMART; SM00065; GAF; 1.
DR   SMART; SM00267; GGDEF; 1.
DR   SMART; SM00086; PAC; 1.
DR   SMART; SM00091; PAS; 2.
DR   SUPFAM; SSF141868; SSF141868; 1.
DR   SUPFAM; SSF55073; SSF55073; 1.
DR   SUPFAM; SSF55785; SSF55785; 2.
DR   TIGRFAMs; TIGR00254; GGDEF; 1.
DR   TIGRFAMs; TIGR00229; sensory_box; 2.
DR   PROSITE; PS50883; EAL; 1.
DR   PROSITE; PS50887; GGDEF; 1.
DR   PROSITE; PS50113; PAC; 1.
DR   PROSITE; PS50112; PAS; 2.
PE   4: Predicted;
DR   PRODOM; Q13IZ7.
DR   SWISS-2DPAGE; Q13IZ7.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001817};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001817}.
FT   DOMAIN        6     50       PAS. {ECO:0000259|PROSITE:PS50112}.
FT   DOMAIN      123    167       PAS. {ECO:0000259|PROSITE:PS50112}.
FT   DOMAIN      201    253       PAC. {ECO:0000259|PROSITE:PS50113}.
FT   DOMAIN      446    578       GGDEF. {ECO:0000259|PROSITE:PS50887}.
FT   DOMAIN      587    842       EAL. {ECO:0000259|PROSITE:PS50883}.
FT   COILED      427    447       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   847 AA;  92454 MW;  CEFEA08260C0B314 CRC64;
     MAQAQIAGTL VQVLAQIPDA VVLVDEDGAI GFFNPAAEAL WGLTAAAVLG ADAGMLLPRG
     IQPAGHGVQT GNVDGPGLAL QIERNDGVMR RGQMSIHGFE VAGRRFRAAF IRDITDQHRQ
     CEEWQQLLRV VNGSDNAIIV ASLDGSISFI NSGVTRMLGY AAAEVQGLRL VEPFAGVHTN
     MAAVERIQSA AREPSTPDHP FRQDLLVYTK GGRPLWVNVG ITVITDNAGA PVNLLAVLTD
     ITLTRMREEL QQKVLDAMAR ELPATEVAGI LCREVERIAP EVVATFLRVD DGRLFTLAAP
     RLPVTVTRAM DGESIGPCAG SCGTAAWRGT PVVVTDIASD PLWTGYRDLV LPLGLAACWS
     YPVKGADGSV LGTFAFYYRE NHGPVAFHQS LVDMGLSLCA LLLEREKARM RIHQLAFHDT
     LTGLPNRNMF ETQAQQLLND ARRTERELAL VFIDLDHFKR VNDTRGHATG DEVLCETGRR
     FKSVLRDGDL LGRLAGDEFV AILPHCGVHQ ATGIVERLLA ATAPPVVVAG APIHASASIG
     IAMYPADGEH VPTLLRQADI AMYHAKARGR GHFCFFREEM SRNIQEQAML EADLRVALKH
     DLLDLWYQPQ FDAANGHVLS GVEALLRWNH ATLGSVPPVR FVVLAEECGL IGELGKWVTQ
     RACRQLADWR ARGVEIPRVS INLSASDFRD STLAERVART LLAHGLQPHD LTLEMTESVM
     LGDEPGVLSM IDELHRLGIQ LSLDDFGTGY SSLGYLHRLP LDELKLDRSF VRDLDHSDSA
     RALTSTVLRI GESLNIKVVA EGVETDTQRQ FLVEHGCPVL QGYLLARPMA PHLLEEWLRA
     AHAGSRI
//

If you have problems or comments...

PBIL Back to PBIL home page