(data stored in SCRATCH zone)

SWISSPROT: Q13QT7_PARXL

ID   Q13QT7_PARXL            Unreviewed;       625 AA.
AC   Q13QT7;
DT   22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT   22-AUG-2006, sequence version 1.
DT   07-JUN-2017, entry version 88.
DE   SubName: Full=Sigma54 specific transcriptional regulator with GAF sensor, Fis family {ECO:0000313|EMBL:ABE33552.1};
GN   ORFNames=Bxe_B2439 {ECO:0000313|EMBL:ABE33552.1};
OS   Paraburkholderia xenovorans (strain LB400).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=266265 {ECO:0000313|EMBL:ABE33552.1, ECO:0000313|Proteomes:UP000001817};
RN   [1] {ECO:0000313|EMBL:ABE33552.1, ECO:0000313|Proteomes:UP000001817}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=LB400 {ECO:0000313|EMBL:ABE33552.1,
RC   ECO:0000313|Proteomes:UP000001817};
RX   PubMed=17030797; DOI=10.1073/pnas.0606924103;
RA   Chain P.S.G., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L.,
RA   Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M.,
RA   Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A.,
RA   Marx C.J., Parnell J.J., Ramette A., Richardson P., Seeger M.,
RA   Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B.,
RA   Tiedje J.M.;
RT   "Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp
RT   genome shaped for versatility.";
RL   Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006).
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DR   EMBL; CP000271; ABE33552.1; -; Genomic_DNA.
DR   ProteinModelPortal; Q13QT7; -.
DR   STRING; 266265.Bxe_B2439; -.
DR   EnsemblBacteria; ABE33552; ABE33552; Bxe_B2439.
DR   KEGG; bxe:Bxe_B2439; -.
DR   eggNOG; ENOG4107SZ4; Bacteria.
DR   eggNOG; COG3284; LUCA.
DR   HOGENOM; HOG000058487; -.
DR   OMA; HTMALVN; -.
DR   OrthoDB; POG091H03UM; -.
DR   Proteomes; UP000001817; Chromosome 2.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.30.450.40; -; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR003018; GAF.
DR   InterPro; IPR029016; GAF_dom-like.
DR   InterPro; IPR009057; Homeobox-like.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   Pfam; PF01590; GAF; 1.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF55781; SSF55781; 1.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
DR   PRODOM; Q13QT7.
DR   SWISS-2DPAGE; Q13QT7.
KW   ATP-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110192};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001817};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00814512};
KW   Nucleotide-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110083};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001817};
KW   Transcription {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814760};
KW   Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814754}.
FT   DOMAIN      278    504       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
FT   NP_BIND     306    313       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
FT   NP_BIND     370    379       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
SQ   SEQUENCE   625 AA;  68450 MW;  4A8066A1EF279E77 CRC64;
     MGDLIACSKL EMTTLYQQLA DPELAVVLVD AGGMIVHQVS SVPFAEAVAA DGFRVGALWS
     EREAGTNGMG TCLAERDCIA VCQHEHFYPR YTSLTCSAAP IFDDRGEIAG VLDVTSRSKL
     LQQHSLVLVG MSRQMIENRL LDARYRHANM IHFHSRPEFV GTLHGGKLAV ADDSTVLAAN
     RSALFQLGFR TLGELRGRRI EEAFNASLED MIARSIRGSF HPVTVYSANA TNRFFLVAQT
     PQNSAERGTR VAITAPGARA SAADKRPAPA RLDEIAHLEF GDPRMASQIQ LAARVVQRKI
     PIILRGQTGT GKEVFAQALH SISPHAAGPF VPVNCASLPE NLIESELFGY RAGAFTGAQR
     EGRRGKIVQA NGGTLFLDEI GDMPLSLQAR LLRVIEEHEV TPLGAETTIK VDFQLISASH
     RNLLELVHGG QFREDLYYRL KGVELNLPPL SERIDKLALI HHLLENESDN DPPELTPEAE
     HALLTYAWPG NIRQLRHVLQ MAIALCDGQP IRCEDLPAEI TQRGPETGLL AVSRTAAADF
     EPHPADEADL SSLNAIQLNE RGTVLTLLDE HRWNVSNVAK ALSISRNTLY RKMRRLHIRL
     SHDGSAPDGL PPDDSPSEES PPFSA
//

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