(data stored in SCRATCH zone)

SWISSPROT: Q145W1_PARXL

ID   Q145W1_PARXL            Unreviewed;       505 AA.
AC   Q145W1;
DT   22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT   22-AUG-2006, sequence version 1.
DT   08-MAY-2019, entry version 82.
DE   RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
GN   ORFNames=Bxe_A4122 {ECO:0000313|EMBL:ABE28878.1};
OS   Paraburkholderia xenovorans (strain LB400).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=266265 {ECO:0000313|EMBL:ABE28878.1, ECO:0000313|Proteomes:UP000001817};
RN   [1] {ECO:0000313|EMBL:ABE28878.1, ECO:0000313|Proteomes:UP000001817}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=LB400 {ECO:0000313|EMBL:ABE28878.1,
RC   ECO:0000313|Proteomes:UP000001817};
RX   PubMed=17030797; DOI=10.1073/pnas.0606924103;
RA   Chain P.S., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L.,
RA   Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M.,
RA   Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A.,
RA   Marx C.J., Parnell J.J., Ramette A., Richardson P., Seeger M.,
RA   Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B.,
RA   Tiedje J.M.;
RT   "Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp
RT   genome shaped for versatility.";
RL   Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. {ECO:0000256|PIRNR:PIRNR000774}.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|PIRNR:PIRNR000774}.
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DR   EMBL; CP000270; ABE28878.1; -; Genomic_DNA.
DR   RefSeq; WP_011486707.1; NZ_CP008760.1.
DR   STRING; 266265.Bxe_A4122; -.
DR   EnsemblBacteria; ABE28878; ABE28878; Bxe_A4122.
DR   GeneID; 4003440; -.
DR   KEGG; bxb:DR64_1798; -.
DR   KEGG; bxe:Bxe_A4122; -.
DR   PATRIC; fig|266265.5.peg.360; -.
DR   eggNOG; ENOG4105DTW; Bacteria.
DR   eggNOG; COG1508; LUCA.
DR   HOGENOM; HOG000071905; -.
DR   KO; K03092; -.
DR   OMA; VTTQKFM; -.
DR   OrthoDB; 1906842at2; -.
DR   BioCyc; BXEN266265:BXE_RS01705-MONOMER; -.
DR   Proteomes; UP000001817; Chromosome 1.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.1330; -; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   PANTHER; PTHR32248; PTHR32248; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q145W1.
DR   SWISS-2DPAGE; Q145W1.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001817};
KW   DNA-binding {ECO:0000256|PIRNR:PIRNR000774};
KW   DNA-directed RNA polymerase {ECO:0000256|PIRNR:PIRNR000774};
KW   Nucleotidyltransferase {ECO:0000256|PIRNR:PIRNR000774};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001817};
KW   Sigma factor {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription regulation {ECO:0000256|PIRNR:PIRNR000774};
KW   Transferase {ECO:0000256|PIRNR:PIRNR000774}.
FT   DOMAIN      141    332       Sigma54_CBD. {ECO:0000259|Pfam:PF04963}.
FT   DOMAIN      348    503       Sigma54_DBD. {ECO:0000259|Pfam:PF04552}.
SQ   SEQUENCE   505 AA;  55379 MW;  E1F33581DFE14F66 CRC64;
     MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVAMA ISQNPLLENE DDWIASPLRV
     AADGSLIAQA PNSSAPPDQM GGSTSSSSTS SSERAENGEP QGVDEYNGLA GDSNGDASQW
     NLDDYGRSGN ASDDDDLPPL QIHESSTSLR DHLMAQLRVT QASPRDRALV TFLIESLDDD
     GYLAATLEEV LADLPEELEV DLDELNAALA LLHSFDPAGV GARSASECLK LQLLRLDASP
     TRTLALEIVA HHLELLAARD FTRLRKHLKA SDDDLRDAHV LIRSLEPFPG AAYGKAEADY
     VVPDIMVRKT AQGWQAELNP EVVPKLRINH LYANILRNNR GDPGSGSLRQ QLQEARWLIK
     NIQQRFETIL RVAQAIVERQ KSFFVHGEIA MRPLVLREIA DTLGLHESTV SRVTTGKYML
     TPFGTLEFKY FFGSHVSTDT GGAASSTAIR ALIKQLIGAE NPKSPLSDSR IAELLAEQGF
     VVARRTVAKY REALKIPAVN LRKSL
//

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