(data stored in SCRATCH zone)

SWISSPROT: Q3IIB1_PSEHT

ID   Q3IIB1_PSEHT            Unreviewed;       287 AA.
AC   Q3IIB1;
DT   08-NOV-2005, integrated into UniProtKB/TrEMBL.
DT   08-NOV-2005, sequence version 1.
DT   05-JUL-2017, entry version 92.
DE   RecName: Full=RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961};
DE   AltName: Full=RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961};
GN   Name=rpoH {ECO:0000256|HAMAP-Rule:MF_00961,
GN   ECO:0000313|EMBL:CAI85455.1};
GN   OrderedLocusNames=PSHAa0357 {ECO:0000313|EMBL:CAI85455.1};
OS   Pseudoalteromonas haloplanktis (strain TAC 125).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Pseudoalteromonadaceae; Pseudoalteromonas.
OX   NCBI_TaxID=326442 {ECO:0000313|EMBL:CAI85455.1, ECO:0000313|Proteomes:UP000006843};
RN   [1] {ECO:0000313|EMBL:CAI85455.1, ECO:0000313|Proteomes:UP000006843}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=TAC 125 {ECO:0000313|Proteomes:UP000006843};
RX   PubMed=16169927; DOI=10.1101/gr.4126905;
RA   Medigue C., Krin E., Pascal G., Barbe V., Bernsel A., Bertin P.,
RA   Cheung F., Cruveiller S., Damico S., Duilio A., Fang G., Feller G.,
RA   Mangenot S., Marino G., Nilsson J., Parilli E., Rocha E., Rouy Z.,
RA   Sekowska A., Tutino M.L., Vallenet D., von Heijne G., Danchin A.;
RT   "Coping with cold: the genome of the versatile marine Antarctica
RT   bacterium Pseudoalteromonas haloplanktis TAC125.";
RL   Genome Res. 15:1325-1335(2005).
CC   -!- SUBUNIT: Interacts with the RNA polymerase core enzyme.
CC       {ECO:0000256|HAMAP-Rule:MF_00961}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00961}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation
CC       of feature annotation. {ECO:0000256|HAMAP-Rule:MF_00961}.
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DR   EMBL; CR954246; CAI85455.1; -; Genomic_DNA.
DR   RefSeq; WP_011327068.1; NC_007481.1.
DR   ProteinModelPortal; Q3IIB1; -.
DR   STRING; 326442.PSHAa0357; -.
DR   EnsemblBacteria; CAI85455; CAI85455; PSHAa0357.
DR   GeneID; 32566292; -.
DR   KEGG; pha:PSHAa0357; -.
DR   eggNOG; ENOG4105DEK; Bacteria.
DR   eggNOG; COG0568; LUCA.
DR   HOGENOM; HOG000270269; -.
DR   KO; K03089; -.
DR   OMA; YQRWLAE; -.
DR   OrthoDB; POG091H04HS; -.
DR   Proteomes; UP000006843; Chromosome I.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009408; P:response to heat; IEA:InterPro.
DR   GO; GO:0001123; P:transcription initiation from bacterial-type RNA polymerase promoter; IEA:UniProtKB-HAMAP.
DR   Gene3D; 1.10.10.10; -; 2.
DR   HAMAP; MF_00961; Sigma70_RpoH; 1.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR012759; RNA_pol_sigma_RpoH_proteobac.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02392; rpoH_proteo; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00715; SIGMA70_1; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q3IIB1.
DR   SWISS-2DPAGE; Q3IIB1.
KW   Complete proteome {ECO:0000313|Proteomes:UP000006843};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00961};
KW   DNA-binding {ECO:0000256|HAMAP-Rule:MF_00961,
KW   ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006843};
KW   Sigma factor {ECO:0000256|HAMAP-Rule:MF_00961,
KW   ECO:0000256|SAAS:SAAS00611278};
KW   Stress response {ECO:0000256|HAMAP-Rule:MF_00961,
KW   ECO:0000313|EMBL:CAI85455.1};
KW   Transcription {ECO:0000256|HAMAP-Rule:MF_00961,
KW   ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00961,
KW   ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       80     93       RNA_pol_sigma70. {ECO:0000259|PROSITE:
FT                                PS00715}.
FT   DOMAIN      256    282       RNA_pol_sigma70. {ECO:0000259|PROSITE:
FT                                PS00716}.
FT   DNA_BIND    257    276       H-T-H motif. {ECO:0000256|HAMAP-Rule:
FT                                MF_00961}.
FT   REGION       56    125       Sigma-70 factor domain-2.
FT                                {ECO:0000256|HAMAP-Rule:MF_00961}.
FT   MOTIF        80     83       Interaction with polymerase core subunit
FT                                RpoC. {ECO:0000256|HAMAP-Rule:MF_00961}.
SQ   SEQUENCE   287 AA;  32341 MW;  53E3535346A3F543 CRC64;
     MSKDLYAMAL TVGQQSASMD GYLQAVSTIP MLKVEQEQEL ATRLQEEGDL SAAKQLIMSH
     LRFVAHIAKG YSGYGLPQAD LIQEGNIGLM KAVKRFNPEV GVRLVSFAVH WIKAEIHEFV
     LKNWRIVKVA TTKAQRKLFF NLRKNKKRLG WFNQAEVSTV ASELGVSEKE VREMESRMSG
     QDMGFDLTGD DDDSAPSSTY SPVQYLTDGT ADLADDIEQQ QWQEQSHTRL FSALKTLDER
     SQDIVSARWL TDDKATLQEL AEKYSVSAER VRQLEKTAMK KLQAAMV
//

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