(data stored in SCRATCH zone)

SWISSPROT: Q3ILB6_PSEHT

ID   Q3ILB6_PSEHT            Unreviewed;       619 AA.
AC   Q3ILB6;
DT   08-NOV-2005, integrated into UniProtKB/TrEMBL.
DT   08-NOV-2005, sequence version 1.
DT   07-JUN-2017, entry version 84.
DE   RecName: Full=Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463};
GN   Name=secD {ECO:0000256|HAMAP-Rule:MF_01463,
GN   ECO:0000313|EMBL:CAI85420.1};
GN   OrderedLocusNames=PSHAa0321 {ECO:0000313|EMBL:CAI85420.1};
OS   Pseudoalteromonas haloplanktis (strain TAC 125).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Pseudoalteromonadaceae; Pseudoalteromonas.
OX   NCBI_TaxID=326442 {ECO:0000313|EMBL:CAI85420.1, ECO:0000313|Proteomes:UP000006843};
RN   [1] {ECO:0000313|EMBL:CAI85420.1, ECO:0000313|Proteomes:UP000006843}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=TAC 125 {ECO:0000313|Proteomes:UP000006843};
RX   PubMed=16169927; DOI=10.1101/gr.4126905;
RA   Medigue C., Krin E., Pascal G., Barbe V., Bernsel A., Bertin P.,
RA   Cheung F., Cruveiller S., Damico S., Duilio A., Fang G., Feller G.,
RA   Mangenot S., Marino G., Nilsson J., Parilli E., Rocha E., Rouy Z.,
RA   Sekowska A., Tutino M.L., Vallenet D., von Heijne G., Danchin A.;
RT   "Coping with cold: the genome of the versatile marine Antarctica
RT   bacterium Pseudoalteromonas haloplanktis TAC125.";
RL   Genome Res. 15:1325-1335(2005).
CC   -!- FUNCTION: Part of the Sec protein translocase complex. Interacts
CC       with the SecYEG preprotein conducting channel. SecDF uses the
CC       proton motive force (PMF) to complete protein translocation after
CC       the ATP-dependent function of SecA. {ECO:0000256|HAMAP-
CC       Rule:MF_01463, ECO:0000256|SAAS:SAAS00541769}.
CC   -!- SUBUNIT: Forms a complex with SecF. Part of the essential Sec
CC       protein translocation apparatus which comprises SecA, SecYEG and
CC       auxiliary proteins SecDF-YajC and YidC. {ECO:0000256|HAMAP-
CC       Rule:MF_01463}.
CC   -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000256|HAMAP-
CC       Rule:MF_01463}; Multi-pass membrane protein {ECO:0000256|HAMAP-
CC       Rule:MF_01463}.
CC   -!- SIMILARITY: Belongs to the SecD/SecF family. SecD subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_01463}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation
CC       of feature annotation. {ECO:0000256|HAMAP-Rule:MF_01463}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; CR954246; CAI85420.1; -; Genomic_DNA.
DR   RefSeq; WP_011327034.1; NC_007481.1.
DR   ProteinModelPortal; Q3ILB6; -.
DR   STRING; 326442.PSHAa0321; -.
DR   EnsemblBacteria; CAI85420; CAI85420; PSHAa0321.
DR   KEGG; pha:PSHAa0321; -.
DR   PATRIC; fig|326442.8.peg.307; -.
DR   eggNOG; ENOG4107QN8; Bacteria.
DR   eggNOG; COG0342; LUCA.
DR   HOGENOM; HOG000018637; -.
DR   KO; K03072; -.
DR   OMA; AAPMEII; -.
DR   OrthoDB; POG091H02C5; -.
DR   Proteomes; UP000006843; Chromosome I.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005622; C:intracellular; IEA:GOC.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0015450; F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity; IEA:InterPro.
DR   GO; GO:0065002; P:intracellular protein transmembrane transport; IEA:UniProtKB-HAMAP.
DR   GO; GO:0006605; P:protein targeting; IEA:UniProtKB-HAMAP.
DR   GO; GO:0043952; P:protein transport by the Sec complex; IEA:UniProtKB-HAMAP.
DR   HAMAP; MF_01463_B; SecD_B; 1.
DR   InterPro; IPR001036; Acrflvin-R.
DR   InterPro; IPR005791; SecD.
DR   InterPro; IPR027398; SecD-TM.
DR   InterPro; IPR022813; SecD/SecF_arch_bac.
DR   InterPro; IPR022645; SecD/SecF_bac.
DR   InterPro; IPR022646; SecD/SecF_CS.
DR   Pfam; PF07549; Sec_GG; 1.
DR   Pfam; PF13721; SecD-TM1; 1.
DR   Pfam; PF02355; SecD_SecF; 1.
DR   PRINTS; PR00702; ACRIFLAVINRP.
DR   TIGRFAMs; TIGR00916; 2A0604s01; 1.
DR   TIGRFAMs; TIGR01129; secD; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q3ILB6.
DR   SWISS-2DPAGE; Q3ILB6.
KW   Cell inner membrane {ECO:0000256|HAMAP-Rule:MF_01463};
KW   Cell membrane {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425060};
KW   Complete proteome {ECO:0000313|Proteomes:UP000006843};
KW   Membrane {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00284057};
KW   Protein transport {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425133};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006843};
KW   Translocation {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425069};
KW   Transmembrane {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425065};
KW   Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425143};
KW   Transport {ECO:0000256|HAMAP-Rule:MF_01463,
KW   ECO:0000256|SAAS:SAAS00425109}.
FT   TRANSMEM    456    475       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
FT   TRANSMEM    482    501       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
FT   TRANSMEM    507    529       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
FT   TRANSMEM    550    573       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
FT   TRANSMEM    579    609       Helical. {ECO:0000256|HAMAP-Rule:
FT                                MF_01463}.
FT   DOMAIN        2    102       SecD-TM1. {ECO:0000259|Pfam:PF13721}.
SQ   SEQUENCE   619 AA;  67381 MW;  E23E499B9726CEBC CRC64;
     MLNKFPLWKY LLVLAVVAVG LLYASPNLYG RDPAIQVSGA KGADVDLSVI DKVNATLKKH
     NVSVKSTKLE DGQILVRFRN VEEQLKAQDL LRNSLSDDYI SAINMAPAQP AWLKAVGGNP
     MKLGLDLSGG VHFTMEIDMA TAVDNQLEQM EEDFRSDLRE EKLRYRSVRR VAGSDRMRVE
     MRSEEDKDAA ERFLKTQYPL NVYIDDSSND NAFYATMSEQ KLKEIRDYAI KQNETIIRNR
     INQIGVAEPN VQRQGAERII VQLPGIQDTA RAKEILGATA TLEFREVEEN ADISAAAQGR
     IPPGTEMIMS RDGYPVVLKK RIILEGSHIT GAQSGSDEYQ RPQVSITLDS KGGAKMNAFT
     KRAIGKRMAT VFIEYKPSGK KDADGKALPP IKVEEVINVA TIQARLDRSF RITGIDNPAE
     AHNLSLLLRA GALVAPIQIV EERTVGPSLG QENIEAGMTA VALGFAFVLA FMLIYYKGFG
     MVANLALAAN LVLIIGVMSL IPGATLTLPG IAGIVLTVGM AVDANVLIFE RIREELADGR
     SPQQAVHFGY DSAFSTIFDA NITTLIAAVI LFAVGTGPIA GFAVTLAIGI LTSMFTAIVG
     TRAIINLFIG GKRVDKLSI
//

If you have problems or comments...

PBIL Back to PBIL home page