(data stored in SCRATCH zone)

SWISSPROT: Q47SH0_THEFY

ID   Q47SH0_THEFY            Unreviewed;       267 AA.
AC   Q47SH0;
DT   13-SEP-2005, integrated into UniProtKB/TrEMBL.
DT   13-SEP-2005, sequence version 1.
DT   08-MAY-2019, entry version 104.
DE   SubName: Full=RNA polymerase sigma factor {ECO:0000313|EMBL:AAZ54597.1};
GN   OrderedLocusNames=Tfu_0559 {ECO:0000313|EMBL:AAZ54597.1};
OS   Thermobifida fusca (strain YX).
OC   Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae;
OC   Thermobifida.
OX   NCBI_TaxID=269800 {ECO:0000313|EMBL:AAZ54597.1, ECO:0000313|Proteomes:UP000000434};
RN   [1] {ECO:0000313|Proteomes:UP000000434}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=YX {ECO:0000313|Proteomes:UP000000434};
RX   PubMed=17209016; DOI=10.1128/JB.01899-06;
RA   Lykidis A., Mavromatis K., Ivanova N., Anderson I., Land M.,
RA   DiBartolo G., Martinez M., Lapidus A., Lucas S., Copeland A.,
RA   Richardson P., Wilson D.B., Kyrpides N.;
RT   "Genome sequence and analysis of the soil cellulolytic actinomycete
RT   Thermobifida fusca YX.";
RL   J. Bacteriol. 189:2477-2486(2007).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CP000088; AAZ54597.1; -; Genomic_DNA.
DR   RefSeq; WP_011291006.1; NC_007333.1.
DR   STRING; 269800.Tfu_0559; -.
DR   EnsemblBacteria; AAZ54597; AAZ54597; Tfu_0559.
DR   KEGG; tfu:Tfu_0559; -.
DR   eggNOG; ENOG4105E65; Bacteria.
DR   eggNOG; COG1191; LUCA.
DR   HOGENOM; HOG000270270; -.
DR   KO; K03090; -.
DR   OMA; RGEIQHY; -.
DR   OrthoDB; 1857862at2; -.
DR   BioCyc; TFUS269800:G1G4Q-570-MONOMER; -.
DR   Proteomes; UP000000434; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR014322; RNA_pol_sigma-B/F/G.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88659; SSF88659; 2.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02980; SigBFG; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q47SH0.
DR   SWISS-2DPAGE; Q47SH0.
KW   Complete proteome {ECO:0000313|Proteomes:UP000000434};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000434};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       46    115       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      130    187       Sigma70_r3. {ECO:0000259|Pfam:PF04539}.
FT   DOMAIN      212    261       Sigma70_r4. {ECO:0000259|Pfam:PF04545}.
SQ   SEQUENCE   267 AA;  30200 MW;  2FCD880A691276B5 CRC64;
     MSERGPALTA QTEHSTPDRA RARELFERLG ELDPDSPERQ RIRDELVELH LPLVEYLARR
     FRNRGEWLDD LTQVATIGLI KSIDRFDLSR GVEFSTYATP TIVGEIKRHF RDKGWAVRVP
     RRLQELKLSL TKAVSELSQR HGRAPTVAEL AEYLKMSEEE VLEGLESANA YSTVSLDAPD
     NGDEDAPAVA DSLGIMDESL EGVEYRESLK PLLERLPPRE KKILLLRFFG NMTQSQIAAE
     LGISQMHVSR LLARTLAQLR QALTADD
//

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