(data stored in SCRATCH zone)

SWISSPROT: Q5LVY1_RUEPO

ID   Q5LVY1_RUEPO            Unreviewed;       802 AA.
AC   Q5LVY1;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 81.
DE   SubName: Full=Aminomethyl transferase family protein {ECO:0000313|EMBL:AAV93879.1};
GN   OrderedLocusNames=SPO0564 {ECO:0000313|EMBL:AAV93879.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93879.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93879.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93879.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
CC   -!- SIMILARITY: Belongs to the GcvT family.
CC       {ECO:0000256|SAAS:SAAS00998751}.
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DR   EMBL; CP000031; AAV93879.1; -; Genomic_DNA.
DR   RefSeq; WP_011046320.1; NC_003911.12.
DR   STRING; 246200.SPO0564; -.
DR   EnsemblBacteria; AAV93879; AAV93879; SPO0564.
DR   KEGG; sil:SPO0564; -.
DR   eggNOG; ENOG4108NGM; Bacteria.
DR   eggNOG; COG0404; LUCA.
DR   eggNOG; COG0665; LUCA.
DR   HOGENOM; HOG000251716; -.
DR   KO; K00315; -.
DR   OMA; AKQVGRM; -.
DR   OrthoDB; 282830at2; -.
DR   BioCyc; RPOM246200:G1G48-571-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro.
DR   GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR   Gene3D; 3.30.1360.120; -; 1.
DR   Gene3D; 3.50.50.60; -; 1.
DR   InterPro; IPR006076; FAD-dep_OxRdtase.
DR   InterPro; IPR036188; FAD/NAD-bd_sf.
DR   InterPro; IPR032503; FAO_M.
DR   InterPro; IPR013977; GCV_T_C.
DR   InterPro; IPR006222; GCV_T_N.
DR   InterPro; IPR029043; GcvT/YgfZ_C.
DR   InterPro; IPR027266; TrmE/GcvT_dom1.
DR   Pfam; PF01266; DAO; 1.
DR   Pfam; PF16350; FAO_M; 1.
DR   Pfam; PF01571; GCV_T; 1.
DR   Pfam; PF08669; GCV_T_C; 1.
DR   SUPFAM; SSF101790; SSF101790; 1.
DR   SUPFAM; SSF51905; SSF51905; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q5LVY1.
DR   SWISS-2DPAGE; Q5LVY1.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW   Transferase {ECO:0000313|EMBL:AAV93879.1};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM      7     28       Helical. {ECO:0000256|SAM:Phobius}.
FT   DOMAIN        6    364       DAO. {ECO:0000259|Pfam:PF01266}.
FT   DOMAIN      367    421       FAO_M. {ECO:0000259|Pfam:PF16350}.
FT   DOMAIN      425    687       GCV_T. {ECO:0000259|Pfam:PF01571}.
FT   DOMAIN      715    794       GCV_T_C. {ECO:0000259|Pfam:PF08669}.
SQ   SEQUENCE   802 AA;  88432 MW;  00ECF73C7B584B66 CRC64;
     MKSHYRVVVI GGGVVGASVL YHLAKFGWTD VVMLERRRLA SGSSWHAAGG IHALNADPNM
     AALQAYTIDL LSEIEKESGQ NIGLHMTGGL TLAGTPERWE WLQANYRIFQ SIGIDDCELL
     TPQEAQRRCP IMSTDGVLGA MWADREGYID TTGTVQAYAT AARKRGAEYY EDTKVEQLIQ
     TADGWQVVTD KGTITCEHVV NAAGLWAKQV GRMAGVELPV SPLKHHYLIT DTVPEVAAAE
     FEMPMTVDLE GFTYMRQDQK GILVGIYEIN HEHWAMDGAP WNYGEELFQE QLDRIENELM
     LGFARYPSIQ DVGIKTWVNG AFTFSPDGNP LVGPVPGKRG YWSACAVMAG FLQGGGVGKT
     LAEWMIHGEP EADAWSMDVA RYGDYAQNKR YIRETTGQFY SRRFVMSYPN EQLPAGRPLK
     MAPAHDAMTA AGCRWGVSWD LEVPLYFAPS EDFVENLTLK RSNAHPIVAE ECRVIREGVG
     LLDITGFSRF EVSGPNAEAW LDKLFATKLP APGRARLAVM LSETGRLKGD LTLLNWGDGT
     WWIMGSYYLR AWHMRWFNDH LDDGVSVRDL GEEICGFGLV GPKSRTVIEK LAEQDISELK
     FMGCGSFDIG LVRARVARMS VTGEMGYEIN CRYGDHIALR RMLLEAGAGE DICEVGFNAL
     LSTRIEKSFG IWSAEFTQDR TPGMTAMDRW IAWDKGDFIG RDAAIAERDG NGPARVQVTL
     EVDAADADAS GYEPVWADGV QIGFVTSGAY GHYTGKSLAM ALVDRDRAHP GTSVSVHVVG
     VERPATIIAP SPYDPDGKAM RG
//

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