(data stored in SCRATCH zone)

SWISSPROT: Q5LW10_RUEPO

ID   Q5LW10_RUEPO            Unreviewed;       513 AA.
AC   Q5LW10;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 74.
DE   SubName: Full=Diguanylate cyclase, putative {ECO:0000313|EMBL:AAV93850.1};
GN   OrderedLocusNames=SPO0533 {ECO:0000313|EMBL:AAV93850.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93850.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93850.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93850.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
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DR   EMBL; CP000031; AAV93850.1; -; Genomic_DNA.
DR   RefSeq; WP_011046292.1; NC_003911.12.
DR   STRING; 246200.SPO0533; -.
DR   EnsemblBacteria; AAV93850; AAV93850; SPO0533.
DR   KEGG; sil:SPO0533; -.
DR   eggNOG; ENOG4105BZU; Bacteria.
DR   eggNOG; ENOG410XNMH; LUCA.
DR   HOGENOM; HOG000250984; -.
DR   OMA; RFCCAFQ; -.
DR   OrthoDB; 1635706at2; -.
DR   BioCyc; RPOM246200:G1G48-540-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   CDD; cd01948; EAL; 1.
DR   CDD; cd01949; GGDEF; 1.
DR   Gene3D; 3.20.20.450; -; 1.
DR   InterPro; IPR001633; EAL_dom.
DR   InterPro; IPR035919; EAL_sf.
DR   InterPro; IPR000160; GGDEF_dom.
DR   InterPro; IPR029787; Nucleotide_cyclase.
DR   Pfam; PF00563; EAL; 1.
DR   Pfam; PF00990; GGDEF; 1.
DR   SMART; SM00052; EAL; 1.
DR   SMART; SM00267; GGDEF; 1.
DR   SUPFAM; SSF141868; SSF141868; 1.
DR   SUPFAM; SSF55073; SSF55073; 1.
DR   TIGRFAMs; TIGR00254; GGDEF; 1.
DR   PROSITE; PS50883; EAL; 1.
DR   PROSITE; PS50887; GGDEF; 1.
PE   4: Predicted;
DR   PRODOM; Q5LW10.
DR   SWISS-2DPAGE; Q5LW10.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM     12     35       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM     41     61       Helical. {ECO:0000256|SAM:Phobius}.
FT   DOMAIN       99    235       GGDEF. {ECO:0000259|PROSITE:PS50887}.
FT   DOMAIN      244    499       EAL. {ECO:0000259|PROSITE:PS50883}.
SQ   SEQUENCE   513 AA;  55816 MW;  C41C39D583B834F8 CRC64;
     MRIKPSLTRI RNAVVPVLTG PPILAFLPAV TLGAFWLGGE IALLLISLGL PLMFAFAGAF
     GKWPVNHQLP RDSVTGLMLK DGFEGALTHI HAMAAETDRK SACFIIELDD YADLVDHHGQ
     EAGDLVALRS GERILSAVRN NDVVARLGDR RFAVCLAPVP QLDLELCIQL AGRMQSAVED
     PISLDGVAIY VSCSIGFCQN RRAPGSSASD WLDAANVALA AAQGAGPSAI RAYAPDMERR
     PSGAPDLRDE IQAALENGQI QPWYQPQIST DTGKVTGFEA LARWNHPTRG LLAPNLFLPV
     IEEAGLMERL GQVMLYHALT AVKAWDSAGV DVPRVGVNFA SDELRNPGLV ERVQWELDRF
     DLTPDRLSVE ILETVFSNTP DDVITRNIAG LGKLGCRIDL DDFGTGHASI ASIRRFDISR
     IKIDRSFVMK ADRDPEQQRM IAAILTMAER LELETLAEGV ETVGEHALLA QLGCDHVQGF
     GIGKPMPFDQ TLDWIAHHDA KLQDAPRIGR ETG
//

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