(data stored in SCRATCH zone)

SWISSPROT: Q5LWB9_RUEPO

ID   Q5LWB9_RUEPO            Unreviewed;       193 AA.
AC   Q5LWB9;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 77.
DE   SubName: Full=DNA-binding protein, putative {ECO:0000313|EMBL:AAV93741.1};
GN   OrderedLocusNames=SPO0423 {ECO:0000313|EMBL:AAV93741.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93741.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93741.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93741.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
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DR   EMBL; CP000031; AAV93741.1; -; Genomic_DNA.
DR   RefSeq; WP_011046184.1; NC_003911.12.
DR   STRING; 246200.SPO0423; -.
DR   EnsemblBacteria; AAV93741; AAV93741; SPO0423.
DR   KEGG; sil:SPO0423; -.
DR   eggNOG; ENOG4105NN9; Bacteria.
DR   eggNOG; COG1396; LUCA.
DR   HOGENOM; HOG000263463; -.
DR   OMA; AGDSFCY; -.
DR   OrthoDB; 1292067at2; -.
DR   BioCyc; RPOM246200:G1G48-430-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   CDD; cd00093; HTH_XRE; 1.
DR   Gene3D; 2.60.120.10; -; 1.
DR   InterPro; IPR001387; Cro/C1-type_HTH.
DR   InterPro; IPR013096; Cupin_2.
DR   InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR   InterPro; IPR014710; RmlC-like_jellyroll.
DR   InterPro; IPR011051; RmlC_Cupin_sf.
DR   Pfam; PF07883; Cupin_2; 1.
DR   Pfam; PF01381; HTH_3; 1.
DR   SMART; SM00530; HTH_XRE; 1.
DR   SUPFAM; SSF47413; SSF47413; 1.
DR   SUPFAM; SSF51182; SSF51182; 1.
DR   PROSITE; PS50943; HTH_CROC1; 1.
PE   4: Predicted;
DR   PRODOM; Q5LWB9.
DR   SWISS-2DPAGE; Q5LWB9.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   DNA-binding {ECO:0000313|EMBL:AAV93741.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023}.
FT   DOMAIN       17     71       HTH cro/C1-type. {ECO:0000259|PROSITE:
FT                                PS50943}.
SQ   SEQUENCE   193 AA;  20873 MW;  9D30A60D2B920962 CRC64;
     MSETAPRQTT PIIGTRMREL RKARGLTLKQ LAAATGLSIG YLSQLERQAA DPSVRALNVI
     STALGVGINW FFPDPDTVSD PEADLVVRAD RRRTLRFSSG VRDELISPNL SGQLELIVTT
     FDPGAGSGAE LYAHRGEEAG FIVEGQLEVT VGARLVTLGV GDTVQFASTI PHRYHNPGPG
     RTVMIWAVTP PYY
//

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