(data stored in SCRATCH zone)

SWISSPROT: Q5LWF8_RUEPO

ID   Q5LWF8_RUEPO            Unreviewed;       385 AA.
AC   Q5LWF8;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 90.
DE   RecName: Full=Oxygen-independent coproporphyrinogen-III oxidase-like protein {ECO:0000256|RuleBase:RU364116};
DE            EC=1.3.99.- {ECO:0000256|RuleBase:RU364116};
GN   OrderedLocusNames=SPO0006 {ECO:0000313|EMBL:AAV93337.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93337.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93337.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93337.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
CC   -!- FUNCTION: Involved in the biosynthesis of porphyrin-containing
CC       compound. {ECO:0000256|RuleBase:RU364116}.
CC   -!- COFACTOR:
CC       Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC         Evidence={ECO:0000256|RuleBase:RU364116};
CC   -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-
CC       IX biosynthesis. {ECO:0000256|RuleBase:RU364116}.
CC   -!- SIMILARITY: Belongs to the anaerobic coproporphyrinogen-III
CC       oxidase family. {ECO:0000256|RuleBase:RU364116}.
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DR   EMBL; CP000031; AAV93337.1; -; Genomic_DNA.
DR   RefSeq; WP_011045778.1; NC_003911.12.
DR   STRING; 246200.SPO0006; -.
DR   EnsemblBacteria; AAV93337; AAV93337; SPO0006.
DR   KEGG; sil:SPO0006; -.
DR   eggNOG; ENOG4105CSA; Bacteria.
DR   eggNOG; COG0635; LUCA.
DR   HOGENOM; HOG000015381; -.
DR   OMA; GPSAHSF; -.
DR   OrthoDB; 1130951at2; -.
DR   BioCyc; RPOM246200:G1G48-6-MONOMER; -.
DR   UniPathway; UPA00251; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0004109; F:coproporphyrinogen oxidase activity; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway.
DR   Gene3D; 3.80.30.20; -; 1.
DR   InterPro; IPR034505; Coproporphyrinogen-III_oxidase.
DR   InterPro; IPR006638; Elp3/MiaB/NifB.
DR   InterPro; IPR010723; HemN_C.
DR   InterPro; IPR004559; HemW-like.
DR   InterPro; IPR007197; rSAM.
DR   InterPro; IPR023404; rSAM_horseshoe.
DR   PANTHER; PTHR13932; PTHR13932; 1.
DR   Pfam; PF06969; HemN_C; 1.
DR   Pfam; PF04055; Radical_SAM; 1.
DR   SMART; SM00729; Elp3; 1.
DR   TIGRFAMs; TIGR00539; hemN_rel; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q5LWF8.
DR   SWISS-2DPAGE; Q5LWF8.
KW   4Fe-4S {ECO:0000256|RuleBase:RU364116};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   Iron {ECO:0000256|RuleBase:RU364116};
KW   Iron-sulfur {ECO:0000256|RuleBase:RU364116};
KW   Metal-binding {ECO:0000256|RuleBase:RU364116};
KW   Oxidoreductase {ECO:0000256|RuleBase:RU364116};
KW   Porphyrin biosynthesis {ECO:0000256|RuleBase:RU364116};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW   S-adenosyl-L-methionine {ECO:0000256|RuleBase:RU364116}.
FT   DOMAIN        9    228       Elp3. {ECO:0000259|SMART:SM00729}.
SQ   SEQUENCE   385 AA;  42662 MW;  D13D51732CADBE3B CRC64;
     MADDWQHGGF GLYVHWPFCQ AKCPYCDFNS HVAREIDQKA WVRAYVSELE RCAAELPGRV
     LNTIFFGGGT PSLMMPETVA AVIETVRRLW PTSNDMEITL EANPGSVEAG RFAAYRDGGV
     NRISMGVQAL NDRDLHRLGR IHSVAEARAA FDIARRCFER VSFDLIYARQ DQTPEAWRAE
     LNEALAMAVD HLSLYQLTIE DGTAFGDRYA RGKLRGLPAD DDAADMYLIT QEVCATHGLP
     AYEVSNHARP GSESRHNLIY WRYGDYVGIG PGAHGRITVD GQRFATESPL NPGAWLGAVA
     KGSGELSRVA LSLQDQADEY LMMGLRIAEG LDIHRYEALS PQPLNRNRLA HLTELGMIEI
     EGTRLKATAQ GRAVLNAVIL DLMSE
//

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