(data stored in SCRATCH zone)

SWISSPROT: Q5LWN3_RUEPO

ID   Q5LWN3_RUEPO            Unreviewed;       187 AA.
AC   Q5LWN3;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 70.
DE   RecName: Full=Ribosome hibernation promoting factor {ECO:0000256|HAMAP-Rule:MF_00839};
DE            Short=HPF {ECO:0000256|HAMAP-Rule:MF_00839};
GN   Name=hpf {ECO:0000256|HAMAP-Rule:MF_00839};
GN   OrderedLocusNames=SPO0078 {ECO:0000313|EMBL:AAV93409.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93409.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93409.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93409.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
CC   -!- FUNCTION: Required for dimerization of active 70S ribosomes into
CC       100S ribosomes in stationary phase; 100S ribosomes are
CC       translationally inactive and sometimes present during exponential
CC       growth. {ECO:0000256|HAMAP-Rule:MF_00839}.
CC   -!- SUBUNIT: Interacts with 100S ribosomes. {ECO:0000256|HAMAP-
CC       Rule:MF_00839}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00839}.
CC   -!- SIMILARITY: Belongs to the HPF/YfiA ribosome-associated protein
CC       family. Long HPF subfamily. {ECO:0000256|HAMAP-Rule:MF_00839}.
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DR   EMBL; CP000031; AAV93409.1; -; Genomic_DNA.
DR   RefSeq; WP_011045851.1; NC_003911.12.
DR   STRING; 246200.SPO0078; -.
DR   EnsemblBacteria; AAV93409; AAV93409; SPO0078.
DR   KEGG; sil:SPO0078; -.
DR   eggNOG; ENOG4107TNS; Bacteria.
DR   eggNOG; COG1544; LUCA.
DR   HOGENOM; HOG000074926; -.
DR   OMA; RRLKDHH; -.
DR   OrthoDB; 1766263at2; -.
DR   BioCyc; RPOM246200:G1G48-79-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0044238; P:primary metabolic process; IEA:InterPro.
DR   GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-UniRule.
DR   CDD; cd00552; RaiA; 1.
DR   Gene3D; 3.30.160.100; -; 1.
DR   Gene3D; 3.30.505.50; -; 1.
DR   HAMAP; MF_00839; HPF; 1.
DR   InterPro; IPR034694; HPF_long/plastid.
DR   InterPro; IPR036567; RHF-like.
DR   InterPro; IPR003489; RHF/RaiA.
DR   InterPro; IPR032528; Ribosom_S30AE_C.
DR   InterPro; IPR038416; Ribosom_S30AE_C_sf.
DR   Pfam; PF16321; Ribosom_S30AE_C; 1.
DR   Pfam; PF02482; Ribosomal_S30AE; 1.
DR   SUPFAM; SSF69754; SSF69754; 1.
DR   TIGRFAMs; TIGR00741; yfiA; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q5LWN3.
DR   SWISS-2DPAGE; Q5LWN3.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00839};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW   Translation regulation {ECO:0000256|HAMAP-Rule:MF_00839}.
FT   DOMAIN      130    183       Ribosom_S30AE_C. {ECO:0000259|Pfam:
FT                                PF16321}.
FT   COILED       80    100       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   187 AA;  20805 MW;  259D65D0C3101B28 CRC64;
     MRYQISGKQI DIGAALQSHV QTELGEVVSK YAQRPTDAHV VFSRSAHEYV CEATVHLSTG
     LTAQAKAHAT EIYAAFDGCC EKMDKQLRRY KRRLKDHHKD RAEPVELFGA SSYILASEEP
     DAQSEPDSLQ PMIVAEMETK IPSLSVGEAV MQMELAGAPV LVFRNESKDG LNVVYRREDG
     NIGWIDP
//

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