(data stored in SCRATCH zone)

SWISSPROT: Q5LWQ8_RUEPO

ID   Q5LWQ8_RUEPO            Unreviewed;       679 AA.
AC   Q5LWQ8;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 102.
DE   SubName: Full=ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:AAV93438.1};
DE            EC=3.6.1.- {ECO:0000313|EMBL:AAV93438.1};
GN   Name=recQ {ECO:0000313|EMBL:AAV93438.1};
GN   OrderedLocusNames=SPO0107 {ECO:0000313|EMBL:AAV93438.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93438.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93438.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93438.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
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DR   EMBL; CP000031; AAV93438.1; -; Genomic_DNA.
DR   RefSeq; WP_011045880.1; NC_003911.12.
DR   STRING; 246200.SPO0107; -.
DR   EnsemblBacteria; AAV93438; AAV93438; SPO0107.
DR   KEGG; sil:SPO0107; -.
DR   eggNOG; ENOG4105C9U; Bacteria.
DR   eggNOG; COG0514; LUCA.
DR   HOGENOM; HOG000044388; -.
DR   KO; K03654; -.
DR   OMA; QDMFLME; -.
DR   OrthoDB; 54580at2; -.
DR   BioCyc; RPOM246200:G1G48-108-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0043140; F:ATP-dependent 3'-5' DNA helicase activity; IEA:InterPro.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   GO; GO:0006260; P:DNA replication; IEA:InterPro.
DR   GO; GO:0009432; P:SOS response; IEA:InterPro.
DR   CDD; cd00079; HELICc; 1.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR004589; DNA_helicase_ATP-dep_RecQ.
DR   InterPro; IPR006293; DNA_helicase_ATP-dep_RecQ_bac.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR010997; HRDC-like_sf.
DR   InterPro; IPR002121; HRDC_dom.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR032284; RecQ_Zn-bd.
DR   InterPro; IPR018982; RQC_domain.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF00570; HRDC; 1.
DR   Pfam; PF16124; RecQ_Zn_bind; 1.
DR   Pfam; PF09382; RQC; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SMART; SM00341; HRDC; 1.
DR   SMART; SM00956; RQC; 1.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   SUPFAM; SSF47819; SSF47819; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   TIGRFAMs; TIGR01389; recQ; 1.
DR   TIGRFAMs; TIGR00614; recQ_fam; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS50967; HRDC; 2.
PE   4: Predicted;
DR   PRODOM; Q5LWQ8.
DR   SWISS-2DPAGE; Q5LWQ8.
KW   ATP-binding {ECO:0000313|EMBL:AAV93438.1};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   Helicase {ECO:0000313|EMBL:AAV93438.1};
KW   Hydrolase {ECO:0000313|EMBL:AAV93438.1};
KW   Nucleotide-binding {ECO:0000313|EMBL:AAV93438.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023}.
FT   DOMAIN       25    192       Helicase ATP-binding.
FT                                {ECO:0000259|PROSITE:PS51192}.
FT   DOMAIN      214    364       Helicase C-terminal.
FT                                {ECO:0000259|PROSITE:PS51194}.
FT   DOMAIN      520    600       HRDC. {ECO:0000259|PROSITE:PS50967}.
FT   DOMAIN      606    679       HRDC. {ECO:0000259|PROSITE:PS50967}.
SQ   SEQUENCE   679 AA;  74512 MW;  C6BF7C519EF38D84 CRC64;
     MFDAAPLLRD VFGFDAFRPG QEEIAQAVAE GENVLAIMPT GGGKSLCFQL PALMREGVTV
     VISPLIALMR DQVRSLQEAG VEAGALTSGN TPEETEAVWQ ALEAGRLKLL YMAPERLASG
     AAMGMLRRIG VSLIAVDEAH CVSQWGHDFR PDYLRIGELR RALGVPLAAF TATADAETQA
     EIVAKLFDGE EPRSFLRGFD RPNIHLAFAA KDSPRRQILD FAGARRGQSG IVYCGTRAKT
     ETLAQALRED GHSACHYHGG MEAEDRRIVE TRFAREDGLI VVATVAFGMG IDKPDIRWVA
     HADLPKSIEA YYQEIGRAGR DGGPAETLTL FGPDDIRLRR SQIDEGLAPP ERRAADHARL
     NALLGLAEAM TCRRQTLLGY FGETEITCGK CDLCDSPAER FDGTTAVRMA LSAMLRTEEW
     FGATHLIDIL LGNQTDKIRD RRHDQLPTYG VGTEWNRAQW QAIFRQMMGR DLVRPDPERH
     GALRMTEAAL PILRGEAGIE LRKDTVSKAA RRPAVKAMVN DEDAPLLSAL KAKRRALAEA
     ARVPAYVIFP DRTLIEMAEK RPASLDQMAR IGGIGAKKLE RYGAMFLEVV SGAAEMLHPA
     RRKLAGRQTG NIYDRLLAVQ ADLARGPDGI DKPLSCSASQ LAKVAQMRPD DRSGLEALLG
     DRRWERFGEA FLDVLGQTT
//

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