(data stored in SCRATCH zone)

SWISSPROT: Q5LX17_RUEPO

ID   Q5LX17_RUEPO            Unreviewed;       152 AA.
AC   Q5LX17;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 93.
DE   SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AAV93548.1};
GN   OrderedLocusNames=SPO0223 {ECO:0000313|EMBL:AAV93548.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93548.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93548.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93548.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP000031; AAV93548.1; -; Genomic_DNA.
DR   RefSeq; WP_011045991.1; NC_003911.12.
DR   STRING; 246200.SPO0223; -.
DR   EnsemblBacteria; AAV93548; AAV93548; SPO0223.
DR   KEGG; sil:SPO0223; -.
DR   eggNOG; ENOG4105EW9; Bacteria.
DR   eggNOG; COG1522; LUCA.
DR   HOGENOM; HOG000115327; -.
DR   OMA; HLMAGSA; -.
DR   OrthoDB; 1534467at2; -.
DR   BioCyc; RPOM246200:G1G48-227-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   CDD; cd00090; HTH_ARSR; 1.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR011991; ArsR-like_HTH.
DR   InterPro; IPR000485; AsnC-type_HTH_dom.
DR   InterPro; IPR011008; Dimeric_a/b-barrel.
DR   InterPro; IPR019888; Tscrpt_reg_AsnC-typ.
DR   InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF01037; AsnC_trans_reg; 1.
DR   PRINTS; PR00033; HTHASNC.
DR   SMART; SM00344; HTH_ASNC; 1.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   SUPFAM; SSF54909; SSF54909; 1.
DR   PROSITE; PS50956; HTH_ASNC_2; 1.
PE   4: Predicted;
DR   PRODOM; Q5LX17.
DR   SWISS-2DPAGE; Q5LX17.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023}.
FT   DOMAIN        3     64       HTH asnC-type. {ECO:0000259|PROSITE:
FT                                PS50956}.
SQ   SEQUENCE   152 AA;  16839 MW;  93D453A9C9457FE4 CRC64;
     MSLDATDRKI LTALQAKGRM SNAELSDKAN LSPSACHRRV QRLEAEGYIR NYVALLDARK
     MGLPTTVFVE ITLQGQADEV LDAFEKAVAR IPDVLECHLM AGTADYILKV VAENTEDFAR
     IHRQHLSRLP GVAQMQSSFA LRTVFKTTAL PV
//

If you have problems or comments...

PBIL Back to PBIL home page