(data stored in SCRATCH zone)

SWISSPROT: Q5LX24_RUEPO

ID   Q5LX24_RUEPO            Unreviewed;       368 AA.
AC   Q5LX24;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 80.
DE   SubName: Full=Lysine dehydrogenase {ECO:0000313|EMBL:AAV93559.1};
GN   Name=lysdh {ECO:0000313|EMBL:AAV93559.1};
GN   OrderedLocusNames=SPO0234 {ECO:0000313|EMBL:AAV93559.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93559.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93559.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000213|PDB:3IC5}
RP   X-RAY CRYSTALLOGRAPHY (2.08 ANGSTROMS) OF 1-115.
RA   Osipiuk J., Tesar C., Freeman L., Joachimiak A.;
RT   "X-ray crystal structure of N-terminal domain of putative saccharopine
RT   dehydrogenase from Ruegeria pomeroyi.";
RL   Submitted (JUL-2009) to the PDB data bank.
RN   [3] {ECO:0000313|EMBL:AAV93559.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
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DR   EMBL; CP000031; AAV93559.1; -; Genomic_DNA.
DR   RefSeq; WP_011046001.1; NC_003911.12.
DR   PDB; 3IC5; X-ray; 2.08 A; A/B=1-115.
DR   PDBsum; 3IC5; -.
DR   SMR; Q5LX24; -.
DR   STRING; 246200.SPO0234; -.
DR   DNASU; 3196075; -.
DR   EnsemblBacteria; AAV93559; AAV93559; SPO0234.
DR   KEGG; sil:SPO0234; -.
DR   eggNOG; ENOG4105DTK; Bacteria.
DR   eggNOG; COG1748; LUCA.
DR   HOGENOM; HOG000260548; -.
DR   OMA; PCEAIVD; -.
DR   OrthoDB; 1006830at2; -.
DR   BioCyc; RPOM246200:G1G48-239-MONOMER; -.
DR   EvolutionaryTrace; Q5LX24; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro.
DR   InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR   InterPro; IPR032095; Sacchrp_dh_C.
DR   InterPro; IPR005097; Sacchrp_dh_NADP.
DR   Pfam; PF16653; Sacchrp_dh_C; 1.
DR   Pfam; PF03435; Sacchrp_dh_NADP; 1.
DR   SUPFAM; SSF51735; SSF51735; 1.
PE   1: Evidence at protein level;
DR   PRODOM; Q5LX24.
DR   SWISS-2DPAGE; Q5LX24.
KW   3D-structure {ECO:0000213|PDB:3IC5};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023}.
FT   DOMAIN        5    113       Sacchrp_dh_NADP. {ECO:0000259|Pfam:
FT                                PF03435}.
FT   DOMAIN      122    354       Sacchrp_dh_C. {ECO:0000259|Pfam:PF16653}.
SQ   SEQUENCE   368 AA;  39578 MW;  95FF59E7DAA80D8D CRC64;
     MRWNICVVGA GKIGQMIAAL LKTSSNYSVT VADHDLAALA VLNRMGVATK QVDAKDEAGL
     AKALGGFDAV ISAAPFFLTP IIAKAAKAAG AHYFDLTEDV AATNAVRALA EDSQTAFMPQ
     CGLAPGFVGI AGAALAAEFD EIDSLHMRVG ALPLYPTNAL KYNLTWSTDG LINEYCNPCD
     AIVNGERVKT APLEDYEILG HDGVEYECFN TSGGLGTLPE TLDGKARSVS YRSIRYPGHR
     DILRLLLNDL GLERRRDLLK DIFETALPRT DQDVVLVYCT AKGRIGGQLR EKSLINKSYS
     RVIDGQVWSA IQVTTAAGVL GVVDLMRAGT LPAKGFVRQE QVKFADFLET EFGRLYRAGD
     LTAQNKAA
//

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