(data stored in SCRATCH zone)

SWISSPROT: Q5LX50_RUEPO

ID   Q5LX50_RUEPO            Unreviewed;       326 AA.
AC   Q5LX50;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 106.
DE   SubName: Full=Transcriptional regulator, AraC family {ECO:0000313|EMBL:AAV93578.1};
GN   OrderedLocusNames=SPO0258 {ECO:0000313|EMBL:AAV93578.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93578.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93578.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93578.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
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DR   EMBL; CP000031; AAV93578.1; -; Genomic_DNA.
DR   RefSeq; WP_011046020.1; NC_003911.12.
DR   STRING; 246200.SPO0258; -.
DR   DNASU; 3195966; -.
DR   EnsemblBacteria; AAV93578; AAV93578; SPO0258.
DR   KEGG; sil:SPO0258; -.
DR   eggNOG; ENOG4105E7U; Bacteria.
DR   eggNOG; ENOG4111N2I; LUCA.
DR   HOGENOM; HOG000136816; -.
DR   OMA; ESAFSHA; -.
DR   OrthoDB; 1785082at2; -.
DR   BioCyc; RPOM246200:G1G48-263-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   InterPro; IPR032783; AraC_lig.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR018060; HTH_AraC.
DR   InterPro; IPR018062; HTH_AraC-typ_CS.
DR   InterPro; IPR011051; RmlC_Cupin_sf.
DR   InterPro; IPR020449; Tscrpt_reg_HTH_AraC-type.
DR   Pfam; PF12852; Cupin_6; 1.
DR   Pfam; PF12833; HTH_18; 1.
DR   PRINTS; PR00032; HTHARAC.
DR   SMART; SM00342; HTH_ARAC; 1.
DR   SUPFAM; SSF46689; SSF46689; 2.
DR   SUPFAM; SSF51182; SSF51182; 1.
DR   PROSITE; PS00041; HTH_ARAC_FAMILY_1; 1.
DR   PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE   4: Predicted;
DR   PRODOM; Q5LX50.
DR   SWISS-2DPAGE; Q5LX50.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00048696};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW   Transcription {ECO:0000256|SAAS:SAAS00048810};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00048643}.
FT   DOMAIN      216    314       HTH araC/xylS-type. {ECO:0000259|PROSITE:
FT                                PS01124}.
SQ   SEQUENCE   326 AA;  35857 MW;  643AB2C5999CE6D1 CRC64;
     MLDLLSDILT RLSLKGTLYF RTSFTPPFGV HVPSYQNVAR FHFAYRGECM VHVPAANETL
     RLTQGDLVLI PHGAEHMLMC QHSRPDSALP LDTVLSRSGY RGEGVLVYGG DEEDQDTQLI
     CGHLTYGMHG RSCPGHTLLE RLPPYILIRD YGEERGVWLE ATLRVIAAEA GRDRMGSDLI
     ALKMTEALFA QAIRAHLETV SPDDGALAGF ADPNLSRALS AFHREPAKDW TVEGLARIAG
     QSRTGFAQHF AAKMGMTPMQ YLTSWRMQIA CEGLVDSRLS VADAAELAGY ASEAAFSRVF
     RKQLGVSPAA YRQQFESAKR QALAAS
//

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