(data stored in SCRATCH zone)

SWISSPROT: Q5LXF0_RUEPO

ID   Q5LXF0_RUEPO            Unreviewed;       128 AA.
AC   Q5LXF0;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 81.
DE   SubName: Full=Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:AAV93676.1};
GN   Name=sdhC {ECO:0000313|EMBL:AAV93676.1};
GN   OrderedLocusNames=SPO0358 {ECO:0000313|EMBL:AAV93676.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93676.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93676.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93676.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
CC   -!- COFACTOR:
CC       Name=heme; Xref=ChEBI:CHEBI:30413;
CC         Evidence={ECO:0000256|PIRSR:PIRSR000178-1};
CC       Note=The heme is bound between the two transmembrane subunits.
CC       {ECO:0000256|PIRSR:PIRSR000178-1};
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DR   EMBL; CP000031; AAV93676.1; -; Genomic_DNA.
DR   RefSeq; WP_011046119.1; NC_003911.12.
DR   STRING; 246200.SPO0358; -.
DR   EnsemblBacteria; AAV93676; AAV93676; SPO0358.
DR   KEGG; sil:SPO0358; -.
DR   eggNOG; ENOG410612Q; Bacteria.
DR   eggNOG; COG2009; LUCA.
DR   HOGENOM; HOG000160253; -.
DR   KO; K00241; -.
DR   OMA; GYTWALM; -.
DR   OrthoDB; 2046680at2; -.
DR   BioCyc; RPOM246200:G1G48-365-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0045281; C:succinate dehydrogenase complex; IEA:InterPro.
DR   GO; GO:0009055; F:electron transfer activity; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0000104; F:succinate dehydrogenase activity; IEA:InterPro.
DR   GO; GO:0006099; P:tricarboxylic acid cycle; IEA:InterPro.
DR   Gene3D; 1.20.1300.10; -; 1.
DR   InterPro; IPR034804; SQR/QFR_C/D.
DR   InterPro; IPR018495; Succ_DH_cyt_bsu_CS.
DR   InterPro; IPR014314; Succ_DH_cytb556.
DR   InterPro; IPR000701; SuccDH_FuR_B_TM-su.
DR   Pfam; PF01127; Sdh_cyt; 1.
DR   PIRSF; PIRSF000178; SDH_cyt_b560; 1.
DR   SUPFAM; SSF81343; SSF81343; 1.
DR   TIGRFAMs; TIGR02970; succ_dehyd_cytB; 1.
DR   PROSITE; PS01001; SDH_CYT_2; 1.
PE   4: Predicted;
DR   PRODOM; Q5LXF0.
DR   SWISS-2DPAGE; Q5LXF0.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   Heme {ECO:0000256|PIRSR:PIRSR000178-1};
KW   Iron {ECO:0000256|PIRSR:PIRSR000178-1};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Metal-binding {ECO:0000256|PIRSR:PIRSR000178-1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM     28     50       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM     57     82       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    108    127       Helical. {ECO:0000256|SAM:Phobius}.
FT   METAL        84     84       Iron (heme axial ligand); shared with
FT                                second transmembrane subunit.
FT                                {ECO:0000256|PIRSR:PIRSR000178-1}.
SQ   SEQUENCE   128 AA;  13905 MW;  75B5C87D7E2F9912 CRC64;
     MADVNRGNRP LSPHLSIYRP QLTSITSILT RITGNALLFA ALLIVWWFLA AATSPEYFAV
     ADGVITSLIG DLVMALSLWG LWYHTLAGIR HLIWDNALGL DLPTAEKLGW AVVIGSVLLT
     ILTLVVIA
//

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