(data stored in SCRATCH zone)

SWISSPROT: FDL27_ARATH

ID   FDL27_ARATH             Reviewed;         419 AA.
AC   Q8H1R7; Q9STQ1;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2003, sequence version 1.
DT   11-DEC-2019, entry version 94.
DE   RecName: Full=F-box/FBD/LRR-repeat protein At4g26340;
GN   OrderedLocusNames=At4g26340; ORFNames=T25K17.150;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617198; DOI=10.1038/47134;
RA   Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA   Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA   Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA   de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA   Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA   Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA   Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA   Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA   Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA   Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA   Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA   Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA   Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA   Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA   Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA   Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA   Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA   Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA   Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA   Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA   Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA   Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA   Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA   Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA   Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA   de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA   Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA   Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA   Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA   Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA   Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA   Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA   Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA   Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA   Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA   O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA   Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA   Martienssen R., McCombie W.R.;
RT   "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL   Nature 402:769-777(1999).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
CC   -!- SEQUENCE CAUTION:
CC       Sequence=CAB38963.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=CAB79489.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
DR   EMBL; AL049171; CAB38963.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AL161565; CAB79489.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002687; AEE85187.1; -; Genomic_DNA.
DR   EMBL; AY142504; AAN13055.1; -; mRNA.
DR   PIR; T06018; T06018.
DR   RefSeq; NP_194364.2; NM_118767.3.
DR   BioGrid; 14027; 2.
DR   STRING; 3702.AT4G26340.1; -.
DR   PaxDb; Q8H1R7; -.
DR   PRIDE; Q8H1R7; -.
DR   DNASU; 828740; -.
DR   EnsemblPlants; AT4G26340.1; AT4G26340.1; AT4G26340.
DR   GeneID; 828740; -.
DR   Gramene; AT4G26340.1; AT4G26340.1; AT4G26340.
DR   KEGG; ath:AT4G26340; -.
DR   Araport; AT4G26340; -.
DR   TAIR; locus:2136834; AT4G26340.
DR   eggNOG; ENOG410JMID; Eukaryota.
DR   eggNOG; ENOG410Z7P5; LUCA.
DR   HOGENOM; HOG000220924; -.
DR   InParanoid; Q8H1R7; -.
DR   OMA; VELWINI; -.
DR   OrthoDB; 686125at2759; -.
DR   PhylomeDB; Q8H1R7; -.
DR   PRO; PR:Q8H1R7; -.
DR   Proteomes; UP000006548; Chromosome 4.
DR   ExpressionAtlas; Q8H1R7; baseline and differential.
DR   Genevisible; Q8H1R7; AT.
DR   Gene3D; 3.80.10.10; -; 1.
DR   InterPro; IPR036047; F-box-like_dom_sf.
DR   InterPro; IPR001810; F-box_dom.
DR   InterPro; IPR006566; FBD.
DR   InterPro; IPR013101; Leu-rich_rpt_2.
DR   InterPro; IPR032675; LRR_dom_sf.
DR   Pfam; PF00646; F-box; 1.
DR   Pfam; PF08387; FBD; 1.
DR   Pfam; PF07723; LRR_2; 1.
DR   SMART; SM00579; FBD; 1.
DR   SMART; SM00256; FBOX; 1.
DR   SUPFAM; SSF81383; SSF81383; 1.
PE   2: Evidence at transcript level;
DR   PRODOM; Q8H1R7.
DR   SWISS-2DPAGE; Q8H1R7.
KW   Leucine-rich repeat; Reference proteome; Repeat.
FT   CHAIN           1..419
FT                   /note="F-box/FBD/LRR-repeat protein At4g26340"
FT                   /id="PRO_0000283119"
FT   DOMAIN          1..53
FT                   /note="F-box"
FT   REPEAT          55..81
FT                   /note="LRR 1"
FT   REPEAT          132..159
FT                   /note="LRR 2"
FT   REPEAT          160..185
FT                   /note="LRR 3"
FT   REPEAT          187..208
FT                   /note="LRR 4"
FT   REPEAT          226..253
FT                   /note="LRR 5"
FT   REPEAT          254..284
FT                   /note="LRR 6"
FT   REPEAT          299..324
FT                   /note="LRR 7"
FT   DOMAIN          339..389
FT                   /note="FBD"
SQ   SEQUENCE   419 AA;  47300 MW;  0B44E172621486B3 CRC64;
     MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ
     FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR RLRQLKINIR TSSNDASFSL
     PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE
     LFVERHDQDL EMDVTFVVPS LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI
     ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
     KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI
     GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM LKELASVPTA STSSKLLFD
//

If you have problems or comments...

PBIL Back to PBIL home page