(data stored in SCRATCH zone)

SWISSPROT: Q8IAX5_PLAF7

ID   Q8IAX5_PLAF7            Unreviewed;       144 AA.
AC   Q8IAX5;
DT   01-MAR-2003, integrated into UniProtKB/TrEMBL.
DT   01-MAR-2003, sequence version 1.
DT   08-MAY-2019, entry version 104.
DE   SubName: Full=40S ribosomal protein S16, putative {ECO:0000313|EMBL:CAD51235.1};
GN   ORFNames=PF3D7_0813900 {ECO:0000313|EMBL:CAD51235.1};
OS   Plasmodium falciparum (isolate 3D7).
OC   Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida;
OC   Plasmodiidae; Plasmodium; Plasmodium (Laverania).
OX   NCBI_TaxID=36329 {ECO:0000313|EMBL:CAD51235.1, ECO:0000313|Proteomes:UP000001450};
RN   [1] {ECO:0000313|Proteomes:UP000001450}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Isolate 3D7 {ECO:0000313|Proteomes:UP000001450};
RX   PubMed=12368864; DOI=10.1038/nature01097;
RA   Gardner M.J., Hall N., Fung E., White O., Berriman M., Hyman R.W.,
RA   Carlton J.M., Pain A., Nelson K.E., Bowman S., Paulsen I.T., James K.,
RA   Eisen J.A., Rutherford K., Salzberg S.L., Craig A., Kyes S.,
RA   Chan M.S., Nene V., Shallom S.J., Suh B., Peterson J., Angiuoli S.,
RA   Pertea M., Allen J., Selengut J., Haft D., Mather M.W., Vaidya A.B.,
RA   Martin D.M., Fairlamb A.H., Fraunholz M.J., Roos D.S., Ralph S.A.,
RA   McFadden G.I., Cummings L.M., Subramanian G.M., Mungall C.,
RA   Venter J.C., Carucci D.J., Hoffman S.L., Newbold C., Davis R.W.,
RA   Fraser C.M., Barrell B.;
RT   "Genome sequence of the human malaria parasite Plasmodium
RT   falciparum.";
RL   Nature 419:498-511(2002).
RN   [2] {ECO:0000313|Proteomes:UP000001450}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Isolate 3D7 {ECO:0000313|Proteomes:UP000001450};
RX   PubMed=12368867; DOI=10.1038/nature01095;
RA   Hall N., Pain A., Berriman M., Churcher C.M., Harris B., Harris D.,
RA   Mungall K.L., Bowman S., Atkin R., Baker S., Barron A., Brooks K.,
RA   Buckee C.O., Burrows C., Cherevach I., Chillingworth C.,
RA   Chillingworth T., Christodoulou Z., Clark L., Clark R., Corton C.,
RA   Cronin A., Davies R.M., Davis P., Dear P., Dearden F., Doggett J.,
RA   Feltwell T., Goble A., Goodhead I., Gwilliam R., Hamlin N., Hance Z.,
RA   Harper D., Hauser H., Hornsby T., Holroyd S., Horrocks P.,
RA   Humphray S., Jagels K., James K.D., Johnson D., Kerhornou A.,
RA   Knights A., Konfortov B., Kyes S., Larke N., Lawson D., Lennard N.,
RA   Line A., Maddison M., Mclean J., Mooney P., Moule S., Murphy L.,
RA   Oliver K., Ormond D., Price C., Quail M.A., Rabbinowitsch E.,
RA   Rajandream M.A., Rutter S., Rutherford K.M., Sanders M., Simmonds M.,
RA   Seeger K., Sharp S., Smith R., Squares R., Squares S., Stevens K.,
RA   Taylor K., Tivey A., Unwin L., Whitehead S., Woodward J.R.,
RA   Sulston J.E., Craig A., Newbold C., Barrell B.G.;
RT   "Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13.";
RL   Nature 419:527-531(2002).
RN   [3] {ECO:0000213|PDB:3J7A}
RP   STRUCTURE BY ELECTRON MICROSCOPY (3.20 ANGSTROMS).
RX   PubMed=24913268; DOI=10.7554/eLife.03080;
RA   Wong W., Bai X.C., Brown A., Fernandez I.S., Hanssen E., Condron M.,
RA   Tan Y.H., Baum J., Scheres S.H.;
RT   "Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to
RT   the anti-protozoan drug emetine.";
RL   Elife 3:e03080-e03080(2014).
RN   [4] {ECO:0000213|PDB:3JBN, ECO:0000213|PDB:3JBO, ECO:0000213|PDB:3JBP}
RP   STRUCTURE BY ELECTRON MICROSCOPY (4.70 ANGSTROMS) OF 6-143.
RX   PubMed=26432834; DOI=10.1093/nar/gkv991;
RA   Sun M., Li W., Blomqvist K., Das S., Hashem Y., Dvorin J.D., Frank J.;
RT   "Dynamical features of the Plasmodium falciparum ribosome during
RT   translation.";
RL   Nucleic Acids Res. 43:10515-10524(2015).
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uS9 family.
CC       {ECO:0000256|RuleBase:RU003815}.
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DR   EMBL; AL844507; CAD51235.1; -; Genomic_DNA.
DR   RefSeq; XP_001349386.1; XM_001349350.1.
DR   PDB; 3J7A; EM; 3.20 A; M=1-144.
DR   PDB; 3JBN; EM; 4.70 A; M=6-143.
DR   PDB; 3JBO; EM; 5.80 A; M=6-143.
DR   PDB; 3JBP; EM; 6.70 A; M=6-143.
DR   PDBsum; 3J7A; -.
DR   PDBsum; 3JBN; -.
DR   PDBsum; 3JBO; -.
DR   PDBsum; 3JBP; -.
DR   SMR; Q8IAX5; -.
DR   IntAct; Q8IAX5; 1.
DR   PRIDE; Q8IAX5; -.
DR   EnsemblProtists; CAD51235; CAD51235; PF3D7_0813900.
DR   GeneDB; PF3D7_0813900.1:pep; -.
DR   GeneID; 2655275; -.
DR   KEGG; pfa:PF3D7_0813900; -.
DR   EuPathDB; PlasmoDB:PF3D7_0813900; -.
DR   HOGENOM; HOG000019803; -.
DR   InParanoid; Q8IAX5; -.
DR   KO; K02960; -.
DR   OMA; FMGQAEA; -.
DR   PhylomeDB; Q8IAX5; -.
DR   Reactome; R-PFA-156827; L13a-mediated translational silencing of Ceruloplasmin expression.
DR   Reactome; R-PFA-1799339; SRP-dependent cotranslational protein targeting to membrane.
DR   Reactome; R-PFA-72689; Formation of a pool of free 40S subunits.
DR   Reactome; R-PFA-72695; Formation of the ternary complex, and subsequently, the 43S complex.
DR   Reactome; R-PFA-72702; Ribosomal scanning and start codon recognition.
DR   Reactome; R-PFA-72706; GTP hydrolysis and joining of the 60S ribosomal subunit.
DR   Reactome; R-PFA-975956; Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
DR   Reactome; R-PFA-975957; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
DR   Proteomes; UP000001450; Chromosome 8.
DR   GO; GO:0022627; C:cytosolic small ribosomal subunit; ISS:GeneDB.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0003735; F:structural constituent of ribosome; ISS:GeneDB.
DR   GO; GO:0000462; P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IBA:GO_Central.
DR   GO; GO:0006412; P:translation; ISS:GeneDB.
DR   Gene3D; 3.30.230.10; -; 1.
DR   InterPro; IPR020568; Ribosomal_S5_D2-typ_fold.
DR   InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr.
DR   InterPro; IPR000754; Ribosomal_S9.
DR   InterPro; IPR020574; Ribosomal_S9_CS.
DR   PANTHER; PTHR21569; PTHR21569; 1.
DR   Pfam; PF00380; Ribosomal_S9; 1.
DR   SUPFAM; SSF54211; SSF54211; 1.
DR   PROSITE; PS00360; RIBOSOMAL_S9; 1.
PE   1: Evidence at protein level;
DR   PRODOM; Q8IAX5.
DR   SWISS-2DPAGE; Q8IAX5.
KW   3D-structure {ECO:0000213|PDB:3J7A, ECO:0000213|PDB:3JBN,
KW   ECO:0000213|PDB:3JBO, ECO:0000213|PDB:3JBP};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001450};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001450};
KW   Ribonucleoprotein {ECO:0000256|RuleBase:RU003815};
KW   Ribosomal protein {ECO:0000256|RuleBase:RU003815,
KW   ECO:0000313|EMBL:CAD51235.1}.
SQ   SEQUENCE   144 AA;  16285 MW;  B9F03600FC981CD4 CRC64;
     MTTKVKRVQT FGKKKTAVAV ATVTNGKGLI KLNGKNLDLV EPYILKTKVY EPLWLIGSGK
     LKNLDIRIRV KGGGQTSQIY AIRQAIGKGI ISYYQKYVDE STKKELKDVL LRYDRSLLVG
     DTRRCEPKKF GGKGARARYQ KSYR
//

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