(data stored in SCRATCH zone)

SWISSPROT: Q9LFB6_ARATH

ID   Q9LFB6_ARATH            Unreviewed;       267 AA.
AC   Q9LFB6;
DT   01-OCT-2000, integrated into UniProtKB/TrEMBL.
DT   01-OCT-2000, sequence version 1.
DT   30-AUG-2017, entry version 136.
DE   SubName: Full=Duplicated homeodomain-like superfamily protein {ECO:0000313|EMBL:AED90309.1};
DE   SubName: Full=MYB transcription factor {ECO:0000313|EMBL:AAS10000.1};
DE   SubName: Full=Uncharacterized protein F7J8_180 {ECO:0000313|EMBL:CAB69848.1};
GN   OrderedLocusNames=At5g01200 {ECO:0000313|Araport:AT5G01200,
GN   ECO:0000313|EMBL:AED90309.1};
GN   ORFNames=F7J8.180 {ECO:0000313|EMBL:AED90309.1}, F7J8_180
GN   {ECO:0000313|EMBL:CAB69848.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1] {ECO:0000313|EMBL:AED90309.1, ECO:0000313|Proteomes:UP000006548}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX   PubMed=11130714; DOI=10.1038/35048507;
RG   Kazusa DNA Research Institute;
RG   Cold Spring Harbor and Washington University in St Louis Sequencing Consortium;
RG   European Union Arabidopsis Genome Sequencing Consortium;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
RA   Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
RA   Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
RA   Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
RA   Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
RA   Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
RA   Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
RA   Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
RA   Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
RA   Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
RA   Parnell L., Shah R., Rodriguez M., See L.H., Vil D., Baker J.,
RA   Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Dusterhoft A., Stiekema W., Pohl T.,
RA   Entian K.D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Lankhorst R.K., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.W.,
RA   Bevan M., Fransz P.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:823-826(2000).
RN   [2] {ECO:0000313|EMBL:CAB69848.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Bevan M., Zimmermann W., Grueneisen A., Wambutt R., Kalicki J.,
RA   Wohldmann P., Smith A., Bancroft I., Mewes H.W., Rudd S., Lemcke K.,
RA   Mayer K.F.X.;
RL   Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:CAB69848.1}
RP   NUCLEOTIDE SEQUENCE.
RA   EU Arabidopsis sequencing project;
RL   Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|EMBL:AAS10000.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Qu L., Gu H.;
RT   "The MYB Transcription Factor Family in Arabidopsis: A Genome-Wide
RT   Cloning and Expression Pattern Analysis.";
RL   Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
RN   [5] {ECO:0000313|EMBL:AED90309.1}
RP   NUCLEOTIDE SEQUENCE.
RG   TAIR;
RA   Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL   Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN   [6] {ECO:0000313|EMBL:AED90309.1, ECO:0000313|Proteomes:UP000006548}
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RG   The Arabidopsis Information Portal (Araport);
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00548613}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; AY519530; AAS10000.1; -; mRNA.
DR   EMBL; CP002688; AED90309.1; -; Genomic_DNA.
DR   EMBL; AL137189; CAB69848.1; -; Genomic_DNA.
DR   PIR; T45960; T45960.
DR   RefSeq; NP_195740.1; NM_120198.3.
DR   UniGene; At.27639; -.
DR   STRING; 3702.AT5G01200.1; -.
DR   EnsemblPlants; AT5G01200.1; AT5G01200.1; AT5G01200.
DR   GeneID; 831676; -.
DR   Gramene; AT5G01200.1; AT5G01200.1; AT5G01200.
DR   KEGG; ath:AT5G01200; -.
DR   Araport; AT5G01200; -.
DR   TAIR; locus:2150149; AT5G01200.
DR   eggNOG; KOG0724; Eukaryota.
DR   eggNOG; COG5269; LUCA.
DR   HOGENOM; HOG000237920; -.
DR   OMA; ANSDYFF; -.
DR   OrthoDB; EOG09360GNK; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
DR   InterPro; IPR009057; Homeobox-like.
DR   InterPro; IPR017930; Myb_dom.
DR   InterPro; IPR006447; Myb_dom_plants.
DR   InterPro; IPR001005; SANT/Myb.
DR   InterPro; IPR017884; SANT_dom.
DR   Pfam; PF00249; Myb_DNA-binding; 2.
DR   SMART; SM00717; SANT; 2.
DR   SUPFAM; SSF46689; SSF46689; 2.
DR   TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR   PROSITE; PS51294; HTH_MYB; 1.
DR   PROSITE; PS51293; SANT; 1.
PE   2: Evidence at transcript level;
DR   PRODOM; Q9LFB6.
DR   SWISS-2DPAGE; Q9LFB6.
KW   Complete proteome {ECO:0000313|Proteomes:UP000006548};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00617181,
KW   ECO:0000313|EMBL:AED90309.1}; Homeobox {ECO:0000313|EMBL:AED90309.1};
KW   Nucleus {ECO:0000256|SAAS:SAAS00501360};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW   Transcription {ECO:0000256|SAAS:SAAS00455003};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00455001}.
FT   DOMAIN       25     79       SANT. {ECO:0000259|PROSITE:PS51293}.
FT   DOMAIN      140    196       HTH myb-type DNA-binding.
FT                                {ECO:0000259|PROSITE:PS51294}.
SQ   SEQUENCE   267 AA;  29845 MW;  CDE9DC3D1D1BBB75 CRC64;
     MSSSTMYRGV NMFSPANTNW IFQEVREATW TAEENKRFEK ALAYLDDKDN LESWSKIADL
     IPGKTVADVI KRYKELEDDV SDIEAGLIPI PGYGGDASSA ANSDYFFGLE NSSYGYDYVV
     GGKRSSPAMT DCFRSPMPEK ERKKGVPWTE DEHLRFLMGL KKYGKGDWRN IAKSFVTTRT
     PTQVASHAQK YFLRQLTDGK DKRRSSIHDI TTVNIPDADA SATATTADVA LSPTPANSFD
     VFLQPNPHYS FASASASSYY NAFPQWS
//

If you have problems or comments...

PBIL Back to PBIL home page