(data stored in SCRATCH zone)

SWISSPROT: Q9LZW0_ARATH

ID   Q9LZW0_ARATH            Unreviewed;       215 AA.
AC   Q9LZW0;
DT   01-OCT-2000, integrated into UniProtKB/TrEMBL.
DT   01-OCT-2000, sequence version 1.
DT   07-JUN-2017, entry version 120.
DE   SubName: Full=C2H2 and C2HC zinc fingers superfamily protein {ECO:0000313|EMBL:AED90402.1};
DE   SubName: Full=Putative zinc finger protein {ECO:0000313|EMBL:CAB82756.1};
GN   OrderedLocusNames=At5g01860 {ECO:0000313|Araport:AT5G01860,
GN   ECO:0000313|EMBL:AED90402.1};
GN   ORFNames=T20L15.130 {ECO:0000313|EMBL:AED90402.1}, T20L15_130
GN   {ECO:0000313|EMBL:CAB82756.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1] {ECO:0000313|EMBL:AED90402.1, ECO:0000313|Proteomes:UP000006548}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX   PubMed=11130714; DOI=10.1038/35048507;
RG   Kazusa DNA Research Institute;
RG   Cold Spring Harbor and Washington University in St Louis Sequencing Consortium;
RG   European Union Arabidopsis Genome Sequencing Consortium;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
RA   Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
RA   Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
RA   Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
RA   Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
RA   Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
RA   Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
RA   Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
RA   Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
RA   Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
RA   Parnell L., Shah R., Rodriguez M., See L.H., Vil D., Baker J.,
RA   Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Dusterhoft A., Stiekema W., Pohl T.,
RA   Entian K.D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Lankhorst R.K., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.W.,
RA   Bevan M., Fransz P.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:823-826(2000).
RN   [2] {ECO:0000313|EMBL:CAB82756.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Bevan M., Terryn N., Ardiles W., Buysshaert C., Dasseville R.,
RA   De Clerck R., De Keyser A., Neyt P., Rouze P., Van Den Daele H.,
RA   Villaroel R., Gielen J., Van Montagu M., Bancroft I., Mewes H.W.,
RA   Rudd S., Lemcke K., Mayer K.F.X.;
RL   Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:CAB82756.1}
RP   NUCLEOTIDE SEQUENCE.
RA   EU Arabidopsis sequencing project;
RL   Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|EMBL:AED90402.1}
RP   NUCLEOTIDE SEQUENCE.
RG   TAIR;
RA   Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL   Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN   [5] {ECO:0000313|EMBL:AED90402.1, ECO:0000313|Proteomes:UP000006548}
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RG   The Arabidopsis Information Portal (Araport);
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; CP002688; AED90402.1; -; Genomic_DNA.
DR   EMBL; AL162351; CAB82756.1; -; Genomic_DNA.
DR   PIR; T48207; T48207.
DR   RefSeq; NP_195806.1; NM_120264.1.
DR   UniGene; At.54679; -.
DR   SMR; Q9LZW0; -.
DR   STRING; 3702.AT5G01860.1; -.
DR   EnsemblPlants; AT5G01860.1; AT5G01860.1; AT5G01860.
DR   GeneID; 831739; -.
DR   Gramene; AT5G01860.1; AT5G01860.1; AT5G01860.
DR   KEGG; ath:AT5G01860; -.
DR   Araport; AT5G01860; -.
DR   TAIR; locus:2181007; AT5G01860.
DR   eggNOG; ENOG410JQYU; Eukaryota.
DR   eggNOG; ENOG41115TS; LUCA.
DR   HOGENOM; HOG000153201; -.
DR   OMA; FACTFCK; -.
DR   OrthoDB; EOG09360RB0; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR   InterPro; IPR013087; Znf_C2H2_type.
DR   SUPFAM; SSF57667; SSF57667; 1.
DR   PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
DR   PROSITE; PS50157; ZINC_FINGER_C2H2_2; 1.
PE   4: Predicted;
DR   PRODOM; Q9LZW0.
DR   SWISS-2DPAGE; Q9LZW0.
KW   Complete proteome {ECO:0000313|Proteomes:UP000006548};
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00042};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00042};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00042}.
FT   DOMAIN       67     94       C2H2-type. {ECO:0000259|PROSITE:PS50157}.
SQ   SEQUENCE   215 AA;  24053 MW;  8EFD53D4822A9A98 CRC64;
     MELNLSTPTS CSSSSISSSS HEAIPRTKGK TKEEVTAEPS KENQQRLEFR FLFNESSTRN
     EAKARVFACT FCKKEFSTSQ ALGGHQNAHK QERSLAKRRK EIEINYPELS IYSQYPPSGL
     SFSSSSSQYD LGVRYNPNIA KTTKPYPFNI FACRFGYRGG LNFPPMSHLS VPKTDDLSIN
     LISNLEGSIH DQAVKKDQPE ADPCKDSDID LSLKL
//

If you have problems or comments...

PBIL Back to PBIL home page