(data stored in SCRATCH zone)

SWISSPROT: RL312_ARATH

ID   RL312_ARATH             Reviewed;         119 AA.
AC   Q9STR1;
DT   20-JUN-2001, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   11-DEC-2019, entry version 126.
DE   RecName: Full=60S ribosomal protein L31-2;
GN   Name=RPL31B; OrderedLocusNames=At4g26230; ORFNames=T25K17.40;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617198; DOI=10.1038/47134;
RA   Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA   Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA   Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA   de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA   Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA   Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA   Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA   Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA   Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA   Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA   Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA   Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA   Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA   Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA   Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA   Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA   Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA   Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA   Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA   Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA   Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA   Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA   Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA   Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA   Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA   de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA   Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA   Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA   Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA   Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA   Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA   Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA   Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA   Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA   Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA   O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA   Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA   Martienssen R., McCombie W.R.;
RT   "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL   Nature 402:769-777(1999).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA   Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA   Feldmann K.A.;
RT   "Full-length cDNA from Arabidopsis thaliana.";
RL   Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX   PubMed=11598216; DOI=10.1104/pp.127.2.398;
RA   Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA   Delseny M., Bailey-Serres J.;
RT   "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT   genome.";
RL   Plant Physiol. 127:398-415(2001).
CC   -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL31 family.
CC       {ECO:0000305}.
DR   EMBL; AL049171; CAB38952.1; -; Genomic_DNA.
DR   EMBL; AL161564; CAB79478.1; -; Genomic_DNA.
DR   EMBL; CP002687; AEE85173.1; -; Genomic_DNA.
DR   EMBL; BT005841; AAO64776.1; -; mRNA.
DR   EMBL; AY085228; AAM62461.1; -; mRNA.
DR   PIR; T06007; T06007.
DR   RefSeq; NP_194353.1; NM_118756.5.
DR   BioGrid; 14016; 6.
DR   IntAct; Q9STR1; 6.
DR   STRING; 3702.AT4G26230.1; -.
DR   PaxDb; Q9STR1; -.
DR   EnsemblPlants; AT4G26230.1; AT4G26230.1; AT4G26230.
DR   GeneID; 828729; -.
DR   Gramene; AT4G26230.1; AT4G26230.1; AT4G26230.
DR   KEGG; ath:AT4G26230; -.
DR   Araport; AT4G26230; -.
DR   TAIR; locus:2136809; AT4G26230.
DR   eggNOG; KOG0893; Eukaryota.
DR   eggNOG; COG2097; LUCA.
DR   HOGENOM; HOG000216660; -.
DR   InParanoid; Q9STR1; -.
DR   KO; K02910; -.
DR   OMA; RYIMAPT; -.
DR   OrthoDB; 1547011at2759; -.
DR   PhylomeDB; Q9STR1; -.
DR   PRO; PR:Q9STR1; -.
DR   Proteomes; UP000006548; Chromosome 4.
DR   ExpressionAtlas; Q9STR1; baseline and differential.
DR   Genevisible; Q9STR1; AT.
DR   GO; GO:0022625; C:cytosolic large ribosomal subunit; IDA:TAIR.
DR   GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR   GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR   CDD; cd00463; Ribosomal_L31e; 1.
DR   Gene3D; 3.10.440.10; -; 1.
DR   InterPro; IPR000054; Ribosomal_L31e.
DR   InterPro; IPR020052; Ribosomal_L31e_CS.
DR   InterPro; IPR023621; Ribosomal_L31e_dom_sf.
DR   PANTHER; PTHR10956; PTHR10956; 1.
DR   Pfam; PF01198; Ribosomal_L31e; 1.
DR   SMART; SM01380; Ribosomal_L31e; 1.
DR   SUPFAM; SSF54575; SSF54575; 1.
DR   PROSITE; PS01144; RIBOSOMAL_L31E; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q9STR1.
DR   SWISS-2DPAGE; Q9STR1.
KW   Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT   CHAIN           1..119
FT                   /note="60S ribosomal protein L31-2"
FT                   /id="PRO_0000153776"
SQ   SEQUENCE   119 AA;  13820 MW;  44BF2562E0E4C8AC CRC64;
     MSEKKGRKEE VVTREYTINL HRRLHSCTFK KKAPKAIKEI RKFAEKEMGT KDVRVDVKLN
     KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA EIPAEGLSGL GTKIIEEED
//

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