(data stored in SCRATCH zone)

SWISSPROT: Q9ZV45_ARATH

ID   Q9ZV45_ARATH            Unreviewed;        88 AA.
AC   Q9ZV45;
DT   01-MAY-1999, integrated into UniProtKB/TrEMBL.
DT   01-MAY-1999, sequence version 1.
DT   05-JUL-2017, entry version 120.
DE   SubName: Full=Putative small nuclear ribonucleoprotein E {ECO:0000313|EMBL:AAD08943.1};
DE   SubName: Full=Small nuclear ribonucleoprotein family protein {ECO:0000313|EMBL:AEC06800.1};
GN   Name=MSF3.12 {ECO:0000313|EMBL:AEC06800.1};
GN   Synonyms=MSF3_12 {ECO:0000313|EMBL:AEC06800.1};
GN   OrderedLocusNames=At2g18740 {ECO:0000313|Araport:AT2G18740,
GN   ECO:0000313|EMBL:AEC06800.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1] {ECO:0000313|EMBL:AEC06800.1, ECO:0000313|Proteomes:UP000006548}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX   PubMed=10617197; DOI=10.1038/45471;
RA   Lin X., Kaul S., Rounsley S., Shea T.P., Benito M.I., Town C.D.,
RA   Fujii C.Y., Mason T., Bowman C.L., Barnstead M., Feldblyum T.V.,
RA   Buell C.R., Ketchum K.A., Lee J., Ronning C.M., Koo H.L., Moffat K.S.,
RA   Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA   Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA   Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA   Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT   "Sequence and analysis of chromosome 2 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 402:761-768(1999).
RN   [2] {ECO:0000313|EMBL:AAD08943.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Lin X., Kaul S., Shea T.P., Shen M., Barnstead M.E., Fujii C.Y.,
RA   Mason T.M., Bowman C.L., Ronning C.M., Benito M.-I., Carrera A.J.,
RA   Creasy T.H., Buell C.R., Town C.D., Nierman W.C., Fraser C.M.,
RA   Venter J.C.;
RL   Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:AAM64436.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=12093376;
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome
RT   annotation.";
RL   Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002).
RN   [4] {ECO:0000313|EMBL:AAD08943.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Town C.D., Kaul S.;
RL   Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases.
RN   [5] {ECO:0000313|EMBL:AAM64436.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R.,
RA   Feldmann K.;
RL   Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN   [6] {ECO:0000313|EMBL:BAC43399.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J.,
RA   Nakajima M., Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   "Arabidopsis thaliana full-length cDNA.";
RL   Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases.
RN   [7] {ECO:0000313|EMBL:AAO64082.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M.,
RA   Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C.,
RA   Yu G., Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y.,
RA   Ishida J., Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M.,
RA   Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Tripp M.G., Wu T., Shinozaki K., Davis R.W., Ecker J.R.,
RA   Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones.";
RL   Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases.
RN   [8] {ECO:0000313|EMBL:AAM64436.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B.,
RA   Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs.";
RL   Plant Mol. Biol. 60:71-87(2006).
RN   [9] {ECO:0000313|EMBL:AEC06800.1}
RP   NUCLEOTIDE SEQUENCE.
RG   TAIR;
RA   Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL   Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN   [10] {ECO:0000313|EMBL:AEC06800.1, ECO:0000313|Proteomes:UP000006548}
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RG   The Arabidopsis Information Portal (Araport);
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; AC005724; AAD08943.1; -; Genomic_DNA.
DR   EMBL; AY086369; AAM64436.1; -; mRNA.
DR   EMBL; BT005662; AAO64082.1; -; mRNA.
DR   EMBL; CP002685; AEC06800.1; -; Genomic_DNA.
DR   EMBL; AK118809; BAC43399.1; -; mRNA.
DR   PIR; A84568; A84568.
DR   RefSeq; NP_179464.1; NM_127430.3.
DR   UniGene; At.39949; -.
DR   SMR; Q9ZV45; -.
DR   IntAct; Q9ZV45; 5.
DR   STRING; 3702.AT2G18740.1; -.
DR   EnsemblPlants; AT2G18740.1; AT2G18740.1; AT2G18740.
DR   GeneID; 816389; -.
DR   Gramene; AT2G18740.1; AT2G18740.1; AT2G18740.
DR   Araport; AT2G18740; -.
DR   TAIR; locus:2053989; AT2G18740.
DR   eggNOG; KOG1774; Eukaryota.
DR   eggNOG; COG1958; LUCA.
DR   HOGENOM; HOG000223543; -.
DR   OMA; FDEFMNI; -.
DR   OrthoDB; EOG09360STR; -.
DR   Reactome; R-ATH-72163; mRNA Splicing - Major Pathway.
DR   Reactome; R-ATH-72165; mRNA Splicing - Minor Pathway.
DR   Proteomes; UP000006548; Chromosome 2.
DR   ExpressionAtlas; Q9ZV45; baseline and differential.
DR   GO; GO:0005829; C:cytosol; IDA:TAIR.
DR   GO; GO:0071011; C:precatalytic spliceosome; IBA:GO_Central.
DR   GO; GO:0005685; C:U1 snRNP; IBA:GO_Central.
DR   GO; GO:0005686; C:U2 snRNP; IBA:GO_Central.
DR   GO; GO:0005687; C:U4 snRNP; IBA:GO_Central.
DR   GO; GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IBA:GO_Central.
DR   GO; GO:0005682; C:U5 snRNP; IBA:GO_Central.
DR   GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW.
DR   GO; GO:0000387; P:spliceosomal snRNP assembly; IBA:GO_Central.
DR   CDD; cd01718; Sm_E; 1.
DR   InterPro; IPR010920; LSM_dom.
DR   InterPro; IPR001163; LSM_dom_euk/arc.
DR   InterPro; IPR027078; snRNP-E.
DR   PANTHER; PTHR11193; PTHR11193; 1.
DR   Pfam; PF01423; LSM; 1.
DR   SMART; SM00651; Sm; 1.
DR   SUPFAM; SSF50182; SSF50182; 1.
PE   2: Evidence at transcript level;
DR   PRODOM; Q9ZV45.
DR   SWISS-2DPAGE; Q9ZV45.
KW   Complete proteome {ECO:0000313|Proteomes:UP000006548};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW   Ribonucleoprotein {ECO:0000256|SAAS:SAAS00688091,
KW   ECO:0000313|EMBL:AAD08943.1};
KW   Viral nucleoprotein {ECO:0000313|EMBL:AAD08943.1};
KW   Virion {ECO:0000313|EMBL:AAD08943.1}.
FT   DOMAIN       19     85       Sm. {ECO:0000259|SMART:SM00651}.
SQ   SEQUENCE   88 AA;  10298 MW;  762719DD9FDF35C5 CRC64;
     MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV
     SIKKNTRKPL GRILLKGDNI TLMMNTGK
//

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