Page 1 - Database is HOGENOMDNA

Sequence list "HOG000058487_lst":
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Sequences 1 to 20 of 3473
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1. ACCPU_4.PE1607 Organism: CANDIDATUS ACCUMULIBACTER PHOSPHATIS CLADE IIA STR. UW-1              
Location/Qualifiers                      (length = 1362)
FT   CDS             complement(1895955..1897316)
FT                   /gene_family="HOG000058487"
FT                   /product="sigma54 specific transcriptional regulator, Fis
FT                   family"
FT                   /note="PFAM: sigma-54 factor interaction domain-containing
FT                   protein; helix-turn-helix Fis-type; ATPase associated with
FT                   various cellular activities AAA_5; PAS fold-4 domain
FT                   protein; SMART: AAA ATPase; KEGG: azo:azo1234 probable
FT                   transcriptional regulator"

2. ACCPU_4.PE2005 Organism: CANDIDATUS ACCUMULIBACTER PHOSPHATIS CLADE IIA STR. UW-1              
Location/Qualifiers                      (length = 1425)
FT   CDS             2347654..2349078
FT                   /gene_family="HOG000058487"
FT                   /product="two component, sigma54 specific, transcriptional
FT                   regulator, Fis family"
FT                   /note="PFAM: response regulator receiver; sigma-54 factor
FT                   interaction domain-containing protein; helix-turn-helix
FT                   Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1250 sigma-54
FT                   dependent DNA-binding response regulator"

3. ACCPU_4.PE3558 Organism: CANDIDATUS ACCUMULIBACTER PHOSPHATIS CLADE IIA STR. UW-1              
Location/Qualifiers                      (length = 996)
FT   CDS             complement(4206083..4207078)
FT                   /gene_family="HOG000058487"
FT                   /product="sigma54 specific transcriptional regulator, Fis
FT                   family"
FT                   /note="PFAM: sigma-54 factor interaction domain-containing
FT                   protein; helix-turn-helix Fis-type; ATPase associated with
FT                   various cellular activities AAA_5; SMART: AAA ATPase; KEGG:
FT                   hch:HCH_04233 sigma 54-dependent transcriptional activator"

4. ACCPU_4.PE4256 Organism: CANDIDATUS ACCUMULIBACTER PHOSPHATIS CLADE IIA STR. UW-1              
Location/Qualifiers                      (length = 1611)
FT   CDS             4985533..4987143
FT                   /gene_family="HOG000058487"
FT                   /product="transcriptional regulator, NifA, Fis Family"
FT                   /note="KEGG: dar:Daro_1487 helix-turn-helix,
FT                   fis-type:Nif-specific regulatory protein; TIGRFAM:
FT                   Nif-specific regulatory protein; PFAM: sigma-54 factor
FT                   interaction domain-containing protein; helix-turn-helix
FT                   Fis-type; GAF domain protein; SMART: AAA ATPase"

5. ACEAZ_1.PE435 Organism: ACETOHALOBIUM ARABATICUM DSM 5501                                     
Location/Qualifiers                      (length = 1785)
FT   CDS             479842..481626
FT                   /gene_family="HOG000058487"
FT                   /product="PAS modulated sigma54 specific transcriptional
FT                   regulator, Fis family"
FT                   /note="COGs: COG3829 Transcriptional regulator containing
FT                   PAS AAA-type ATPase and DNA-binding domains;
FT                   InterProIPR002078:IPR009057:IPR000014:IPR003593:IPR
FT                   013767:IPR002197; KEGG: amt:Amet_4666 sigma-54 dependent
FT                   trancsriptional regulator; PFAM: sigma-54 factor
FT                   interaction domain-containing protein; PAS fold domain
FT                   protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS
FT                   domain containing protein; SPTR: A6TX18 Sigma54 specific
FT                   transcriptional regulator, Fis family; PFAM: Bacterial
FT                   regulatory protein, Fis family; Sigma-54 interaction
FT                   domain; PAS fold; TIGRFAM: PAS domain S-box"

6. ACEAZ_1.PE901 Organism: ACETOHALOBIUM ARABATICUM DSM 5501                                     
Location/Qualifiers                      (length = 1785)
FT   CDS             993553..995337
FT                   /gene_family="HOG000058487"
FT                   /product="PAS modulated sigma54 specific transcriptional
FT                   regulator, Fis family"
FT                   /note="COGs: COG3829 Transcriptional regulator containing
FT                   PAS AAA-type ATPase and DNA-binding domains;
FT                   InterProIPR000014:IPR003593:IPR002078:IPR009057:IPR
FT                   013767:IPR002197; KEGG: pth:PTH_0844 transcriptional
FT                   regulator; PFAM: sigma-54 factor interaction
FT                   domain-containing protein; PAS fold domain protein;
FT                   helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain
FT                   containing protein; SPTR: A5D421 Transcriptional regulator;
FT                   TIGRFAM: PAS sensor protein; PFAM: Bacterial regulatory
FT                   protein, Fis family; Sigma-54 interaction domain; PAS fold;
FT                   TIGRFAM: PAS domain S-box"

7. ACEAZ_1.PE956 Organism: ACETOHALOBIUM ARABATICUM DSM 5501                                     
Location/Qualifiers                      (length = 1956)
FT   CDS             1059859..1061814
FT                   /gene_family="HOG000058487"
FT                   /product="GAF modulated sigma54 specific transcriptional
FT                   regulator, Fis family"
FT                   /note="COGs: COG3284 Transcriptional activator of
FT                   acetoin/glycerol metabolism;
FT                   InterProIPR000014:IPR003593:IPR002078:IPR009057:IPR
FT                   003018:IPR013767:IPR002197:IPR020441; KEGG: ppd:Ppro_0885
FT                   fis family GAF modulated sigma54 specific transcriptional
FT                   regulator; PFAM: sigma-54 factor interaction
FT                   domain-containing protein; GAF domain protein; PAS fold
FT                   domain protein; helix-turn-helix Fis-type; SMART: AAA
FT                   ATPase; PAS domain containing protein; SPTR: C6MRV0 GAF
FT                   modulated sigma54 specific transcriptional regulator, Fis
FT                   family; TIGRFAM: PAS sensor protein; PFAM: Bacterial
FT                   regulatory protein, Fis family; Sigma-54 interaction
FT                   domain; PAS fold; TIGRFAM: PAS domain S-box"

8. ACEAZ_1.PE1789 Organism: ACETOHALOBIUM ARABATICUM DSM 5501                                     
Location/Qualifiers                      (length = 2082)
FT   CDS             complement(1923669..1925750)
FT                   /gene_family="HOG000058487"
FT                   /product="putative sigma54 specific transcriptional
FT                   regulator"
FT                   /note="COGs: COG3829 Transcriptional regulator containing
FT                   PAS AAA-type ATPase and DNA-binding domains;
FT                   InterProIPR002078:IPR000014:IPR000700:IPR000644:IPR
FT                   013785:IPR013767:IPR003593:IPR009057; KEGG: drm:Dred_0399
FT                   putative PAS/PAC sensor protein; PFAM: sigma-54 factor
FT                   interaction domain-containing protein; CBS domain
FT                   containing protein; PAS fold domain protein; SMART: PAS
FT                   domain containing protein; CBS domain containing protein;
FT                   AAA ATPase; SPTR: Q0AWW3 Sigma-L-dependent transcriptional
FT                   regulator; TIGRFAM: PAS sensor protein; PFAM: CBS domain;
FT                   Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain
FT                   S-box"

9. ACHXA_1.PE333 Organism: ACHROMOBACTER XYLOSOXIDANS A8                                         
Location/Qualifiers                      (length = 1881)
FT   CDS             352560..354440
FT                   /gene_family="HOG000058487"
FT                   /product="sigma-54 interaction domain-containing protein 1"

10. ACHXA_1.PE1388 Organism: ACHROMOBACTER XYLOSOXIDANS A8                                         
Location/Qualifiers                      (length = 1524)
FT   CDS             complement(1485793..1487316)
FT                   /gene_family="HOG000058487"
FT                   /product="anaerobic nitric oxide reductase transcription
FT                   regulator NorR"

11. ACHXA_1.PE1731 Organism: ACHROMOBACTER XYLOSOXIDANS A8                                         
Location/Qualifiers                      (length = 924)
FT   CDS             1874325..1875248
FT                   /product="acetoacetate metabolism regulatory protein AtoC"
FT                   /gene_family="HOG000058487"

12. ACHXA_1.PE3223 Organism: ACHROMOBACTER XYLOSOXIDANS A8                                         
Location/Qualifiers                      (length = 1002)
FT   CDS             3513758..3514759
FT                   /gene_family="HOG000058487"
FT                   /product="mutant NtrC-like activator domain-containing
FT                   protein"

13. ACHXA_1.PE5667 Organism: ACHROMOBACTER XYLOSOXIDANS A8                                         
Location/Qualifiers                      (length = 1893)
FT   CDS             6160653..6162545
FT                   /gene_family="HOG000058487"
FT                   /product="acetoin catabolism regulatory protein"

14. ACHXA_3.PE82 Organism: ACHROMOBACTER XYLOSOXIDANS A8                                         
Location/Qualifiers                      (length = 1680)
FT   CDS             84539..86218
FT                   /gene_family="HOG000058487"
FT                   /product="sigma-54 interaction domain-containing protein 3"

15. ACIAC_1.PE861 Organism: ACIDOVORAX CITRULLI AAC00-1                                           
Location/Qualifiers                      (length = 1122)
FT   CDS             956995..958116
FT                   /gene_family="HOG000058487"
FT                   /product="sigma-54 dependent trancsriptional regulator"
FT                   /note="PFAM: sigma-54 factor, interaction domain-containing
FT                   protein; helix-turn-helix, Fis-type; ATPase associated with
FT                   various cellular activities, AAA_5; SMART: AAA ATPase;
FT                   KEGG: bur:Bcep18194_C7716 sigma54 specific transcriptional
FT                   regulator with PAS sensor, fis family"

16. ACIAC_1.PE3178 Organism: ACIDOVORAX CITRULLI AAC00-1                                           
Location/Qualifiers                      (length = 2100)
FT   CDS             complement(3564031..3566130)
FT                   /gene_family="HOG000058487"
FT                   /product="Fis family GAF modulated sigma54 specific
FT                   transcriptional regulator"
FT                   /note="PFAM: sigma-54 factor, interaction domain-containing
FT                   protein; helix-turn-helix, Fis-type; GAF domain protein;
FT                   SMART: AAA ATPase; KEGG: bcn:Bcen_3245 GAF modulated
FT                   sigma54 specific transcriptional regulator, fis family"

17. ACIAD_1.PE1386 Organism: ACINETOBACTER SP. ADP1                                                
Location/Qualifiers                      (length = 1077)
FT   CDS             1519714..1520790
FT                   /gene_family="HOG000058487"
FT                   (MultiFun:3.1.2.1)"
FT                   /product="putative sigma-54 dependent transcriptional
FT                   regulator"
FT                   /note="Evidence 3 : Function proposed based on presence of
FT                   conserved amino acid motif, structural feature or limited
FT                   homolgy; Product type pr : putative regulator"

18. ACIAD_1.PE1483 Organism: ACINETOBACTER SP. ADP1                                                
Location/Qualifiers                      (length = 960)
FT   CDS             complement(1620783..1621742)
FT                   /gene_family="HOG000058487"
FT                   (MultiFun:3.1.2.1)"
FT                   /product="transcriptional regulator"
FT                   /note="Evidence 3 : Function proposed based on presence of
FT                   conserved amino acid motif, structural feature or limited
FT                   homolgy; Product type pr : putative regulator"

19. ACIAD_1.PE1775 Organism: ACINETOBACTER SP. ADP1                                                
Location/Qualifiers                      (length = 1122)
FT   CDS             complement(1923845..1924966)
FT                   /gene_family="HOG000058487"
FT                   (MultiFun:3.1.2.1)"
FT                   /product="putative sigma-54 dependent transcriptional
FT                   regulator"
FT                   /note="Evidence 3 : Function proposed based on presence of
FT                   conserved amino acid motif, structural feature or limited
FT                   homolgy; Product type pr : putative regulator"

20. ACIB3_1.PE1745 Organism: ACINETOBACTER BAUMANNII AB307-0294                                    
Location/Qualifiers                      (length = 1272)
FT   CDS             1921800..1923071
FT                   /gene_family="HOG000058487"
FT                   /product="Nitrogen assimilation regulatory protein"
FT                   /note="[KE] COG3283 Transcriptional regulator of aromatic
FT                   amino acids metabolism"



User reference: ACNUC7421

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