(data stored in ACNUC9435 zone)

HOGENOM: ACAM1_1_PE1248

ID   ACAM1_1_PE1248                       STANDARD;      PRT;   318 AA.
AC   ACAM1_1_PE1248; B0C599;
DT   00-JAN-0000 (Rel. 1, Created)
DT   00-JAN-0000 (Rel. 2, Last sequence update)
DT   00-JAN-0000 (Rel. 3, Last annotation update)
DE   SubName: Full=RNA polymerase sigma-70 factor; (ACAM1_1.PE1248).
GN   Name=rpoD; OrderedLocusNames=AM1_1305;
OS   ACARYOCHLORIS MARINA MBIC11017.
OC   Bacteria; Cyanobacteria; Acaryochloris.
OX   NCBI_TaxID=329726;
RN   [0]
RP   -.;
RG   -.;
RL   -.;
CC   -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS ACAM1_1.PE1248.
CC       Acaryochloris marina MBIC11017, complete genome.
CC   -!- ANNOTATIONS ORIGIN:B0C599_ACAM1
CC   -!- GENE_FAMILY: HOG000270273 [ FAMILY / ALN / TREE ]
DR   UniProtKB/Swiss-Prot; B0C599; -.
DR   EMBL; CP000828; ABW26339.1; -; Genomic_DNA.
DR   RefSeq; YP_001515653.1; NC_009925.1.
DR   ProteinModelPortal; B0C599; -.
DR   SMR; B0C599; 80-154.
DR   STRING; B0C599; -.
DR   GeneID; 5680127; -.
DR   GenomeReviews; CP000828_GR; AM1_1305.
DR   KEGG; amr:AM1_1305; -.
DR   ProtClustDB; CLSK982641; -.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro.
DR   InterPro; IPR014284; RNA_pol_sigma-70.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR017848; RNA_pol_sigma_RpoD_cyanobac.
DR   InterPro; IPR011991; WHTH_trsnscrt_rep_DNA-bd.
DR   Gene3D; G3DSA:1.10.10.10; Wing_hlx_DNA_bd; 3.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88946; Sigma_r2; 1.
DR   SUPFAM; SSF88659; Sigma_r3_r4; 2.
DR   TIGRFAMs; TIGR02997; Sig70-cyanoRpoD; 1.
DR   TIGRFAMs; TIGR02937; Sigma70-ECF; 1.
DR   HOGENOMDNA; ACAM1_1.PE1248; -.
KW   RNA polymerase sigma-70 factor;
KW   Complete proteome; DNA-binding; Sigma factor; Transcription;
KW   Transcription regulation.
SQ   SEQUENCE   318 AA;  UNKNOWN MW;  UNKNOWN CRC64;
     MKSSVQSKDS ITAYLQEIGR FPLLNHEQEI IFGKQVQRMI MLQELKQQLH EQLEREPNLS
     EWADQADIPV SQLQKELKLG QTANRKMVES NLRLVVSIAK KYNKAKLEFL DLIQEGTIGL
     QRGVEKFDPT KGYRFSTYAY WWIRQAMTRA IAEQERTIRL PIHINEKLNK LRKVKRQLSL
     KLHRDPTVAE LATEMELSPK KVEAFLSYAR HSISLDVQVG DQQNTELWEL LEDPHASPED
     YATASYLQSD LAKLLNVLNP QQREVITLRY GLIDQNPLTL AKVGERLNVS REWVRRVERE
     AFQLLRSQKV VLQEYLAS
//

If you have problems or comments...

PBIL Back to PBIL home page