(data stored in ACNUC10043 zone)

HOGENOM: ARATH_1_PE10

ID   ARATH_1_PE10                         STANDARD;      PRT;   645 AA.
AC   ARATH_1_PE10; Q6R0H1; B9DFD7; B9DFM4; O81713; Q9MAM8;
DT   00-JAN-0000 (Rel. 1, Created)
DT   00-JAN-0000 (Rel. 2, Last sequence update)
DT   00-JAN-0000 (Rel. 3, Last annotation update)
DE   RecName: Full=Protein LHY;AltName: Full=MYB-related transcription factor
DE   LHY;AltName: Full=Protein LATE ELONGATED HYPOCOTYL; (ARATH_1.PE10).
GN   Name=LHY; OrderedLocusNames=At1g01060; ORFNames=T25K16.6;
OS   ARABIDOPSIS THALIANA.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [0]
RP   -.;
RG   -.;
RL   -.;
CC   -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS ARATH_1.PE10.
CC       Arabidopsis thaliana chromosome 1 TAIR10 full sequence 1..30427671
CC       annotated by Ensembl Genomes
CC   -!- ANNOTATIONS ORIGIN:LHY_ARATH
CC   -!- FUNCTION: Transcription factor involved in the circadian clock.
CC       Binds to the promoter region of APRR1/TOC1 and TCP21/CHE to
CC       repress their transcription. Represses both CCA1 and itself.
CC   -!- SUBUNIT: Homodimer or heterodimer with CCA1. Interacts with CCA1
CC       (via internal domain); independently of photoperiod. Functions
CC       probably as part of a large complex. Interacts with CKB1 and CKB3.
CC   -!- SUBCELLULAR LOCATION: Nucleus.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=1;
CC         Comment=A number of isoforms are produced. According to EST
CC         sequences;
CC       Name=1;
CC         IsoId=Q6R0H1-1; Sequence=Displayed;
CC   -!- TISSUE SPECIFICITY: Expressed in leaves, roots, stems, flowers and
CC       siliques.
CC   -!- INDUCTION: Circadian-regulation with peak levels occurring around
CC       1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by
CC       light treatment.
CC   -!- PTM: Phosphorylated by CK2.
CC   -!- DISRUPTION PHENOTYPE: Shorter circadian oscillations.
CC   -!- MISCELLANEOUS: CCA1 and LHY are only partially redundant, but they
CC       bind to the same region of the promoters.
CC   -!- SIMILARITY: Contains 1 HTH myb-type DNA-binding domain.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAF26474.1; Type=Erroneous gene model prediction;
CC   -!- GENE_FAMILY: HOG000084594 [ FAMILY / ALN / TREE ]
DR   HOGENOM:Arabidopsis_thaliana;AT1G01060;AT1G01060.1;AT1G01060.1.
DR   EMBL; AC007323; - ;
DR   EMBL; AJ006404; - ;
DR   EMBL; AK316728; - ;
DR   EMBL; AK316829; - ;
DR   EMBL; AY519507; - ;
DR   UniProtKB/Swiss-Prot; Q6R0H1; B9DFD7; B9DFM4; O81713; Q9MAM8; -.
DR   EMBL; AJ006404; CAA07004.1; -; mRNA.
DR   EMBL; AY519507; AAS09977.1; -; mRNA.
DR   EMBL; AC007323; AAF26474.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002684; AEE27223.1; -; Genomic_DNA.
DR   EMBL; CP002684; AEE27224.1; -; Genomic_DNA.
DR   EMBL; CP002684; AEE27225.1; -; Genomic_DNA.
DR   EMBL; AK316728; BAH19454.1; -; mRNA.
DR   EMBL; AK316829; BAH19541.1; -; mRNA.
DR   IPI; IPI00517620; -.
DR   RefSeq; NP_001030924.1; NM_001035847.1.
DR   RefSeq; NP_171614.1; NM_099988.3.
DR   RefSeq; NP_849568.1; NM_179237.1.
DR   UniGene; At.25466; -.
DR   ProteinModelPortal; Q6R0H1; -.
DR   SMR; Q6R0H1; 25-64.
DR   IntAct; Q6R0H1; 2.
DR   STRING; Q6R0H1; -.
DR   PRIDE; Q6R0H1; -.
DR   EnsemblPlants; AT1G01060.1; AT1G01060.1; AT1G01060.
DR   EnsemblPlants; AT1G01060.2; AT1G01060.2; AT1G01060.
DR   EnsemblPlants; AT1G01060.3; AT1G01060.3; AT1G01060.
DR   GeneID; 839341; -.
DR   GenomeReviews; CT485782_GR; AT1G01060.
DR   KEGG; ath:AT1G01060; -.
DR   GeneFarm; 1653; 100.
DR   TAIR; At1g01060; -.
DR   GeneTree; EPGT00070000028525; -.
DR   InParanoid; Q6R0H1; -.
DR   OMA; DEHERFL; -.
DR   ProtClustDB; CLSN2682827; -.
DR   ArrayExpress; Q6R0H1; -.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005515; F:protein binding; IPI:IntAct.
DR   GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IDA:UniProtKB.
DR   GO; GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB.
DR   GO; GO:0007623; P:circadian rhythm; IGI:TAIR.
DR   GO; GO:0048574; P:long-day photoperiodism, flowering; IGI:TAIR.
DR   GO; GO:0042754; P:negative regulation of circadian rhythm; IMP:TAIR.
DR   GO; GO:0043433; P:negative regulation of sequence-specific DNA binding transcription factor activity; IMP:UniProtKBDR   GO; GO:0009737; P:response to abscisic acid stimulus; IEP:TAIR.
DR   GO; GO:0009737; P:response to abscisic acid stimulus; IEP:TAIR.
DR   GO; GO:0009733; P:response to auxin stimulus; IEP:TAIR.
DR   GO; GO:0046686; P:response to cadmium ion; IEP:TAIR.
DR   GO; GO:0009409; P:response to cold; IGI:TAIR.
DR   GO; GO:0009723; P:response to ethylene stimulus; IEP:TAIR.
DR   GO; GO:0009739; P:response to gibberellin stimulus; IEP:TAIR.
DR   GO; GO:0009753; P:response to jasmonic acid stimulus; IEP:TAIR.
DR   GO; GO:0009751; P:response to salicylic acid stimulus; IEP:TAIR.
DR   GO; GO:0009651; P:response to salt stress; IEP:TAIR.
DR   InterPro; IPR009057; Homeodomain-like.
DR   InterPro; IPR012287; Homeodomain-rel.
DR   InterPro; IPR006447; Myb-like+DNA-bd_dom_SHAQKYF.
DR   InterPro; IPR014778; Myb_DNA-bd.
DR   InterPro; IPR001005; SANT_DNA-bd.
DR   InterPro; IPR017930; Tscrpt_reg_HTH_Myb-type.
DR   Gene3D; G3DSA:1.10.10.60; Homeodomain-rel; 1.
DR   Pfam; PF00249; Myb_DNA-binding; 1.
DR   SMART; SM00717; SANT; 1.
DR   SUPFAM; SSF46689; Homeodomain_like; 1.
DR   TIGRFAMs; TIGR01557; Myb_SHAQKYF; 1.
DR   PROSITE; PS51294; HTH_MYB; 1.
DR   HOGENOMDNA; ARATH_1.PE10; -.
KW   AT1G01060pg.C_scaffold_1320000031; AT1G01060.1.C_scaffold_1320000031;
KW   AC007323; AJ006404; AK316728; AK316829; AY519507;
KW   Alternative splicing; Biological rhythms; Complete proteome;
KW   DNA-binding; Nucleus; Phosphoprotein; Reference proteome;
KW   Transcription; Transcription regulation.
SQ   SEQUENCE   645 AA;  UNKNOWN MW;  UNKNOWN CRC64;
     MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ
     IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP NTPYPRKPGN NGTSSSQVSS
     AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKQVSG
     DIETSKTSTV DNAVQDVPKK NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS
     GMVSQDFMFH PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL
     IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA TVAAATAWWA
     SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF EKQNTALQDQ NLASKSPASS
     SDDSDETGVT KLNADSKTND DKIEEVVVTA AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE
     TDALDKMEKD KEDVKETDEN QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ
     ALFARERLPQ SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL
     KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST
//

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