(data stored in ACNUC16935 zone)

HOGENOM: ARATH_2_PE3825

ID   ARATH_2_PE3825                       STANDARD;      PRT;   128 AA.
AC   ARATH_2_PE3825;
DT   00-JAN-0000 (Rel. 1, Created)
DT   00-JAN-0000 (Rel. 2, Last sequence update)
DT   00-JAN-0000 (Rel. 3, Last annotation update)
DE   RecName: Full=Ubiquitin-60S ribosomal protein L40-1;Contains: RecName:
DE   Full=Ubiquitin;Contains: RecName: Full=60S ribosomal protein L40-1;
DE   AltName: Full=CEP52;Flags: Precursor; (ARATH_2.PE3825).
GN   Name=RPL40A; Synonyms=UBQ2; OrderedLocusNames=At2g36170;
OS   ARABIDOPSIS THALIANA.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [0]
RP   -.;
RG   -.;
RL   -.;
CC   -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS ARATH_2.PE3825.
CC       Arabidopsis thaliana chromosome 2 TAIR10 full sequence 1..19698289
CC       annotated by Ensembl Genomes
CC   -!- ANNOTATIONS ORIGIN:RL40A_ARATH
CC   -!- FUNCTION: Ubiquitin exists either covalently attached to another
CC       protein, or free (unanchored). When covalently bound, it is
CC       conjugated to target proteins via an isopeptide bond either as a
CC       monomer (monoubiquitin), a polymer linked via different Lys
CC       residues of the ubiquitin (polyubiquitin chains) or a linear
CC       polymer linked via the initiator Met of the ubiquitin (linear
CC       polyubiquitin chains). Polyubiquitin chains, when attached to a
CC       target protein, have different functions depending on the Lys
CC       residue of the ubiquitin that is linked: Lys-11-linked is involved
CC       in ERAD (endoplasmic reticulum-associated degradation) and in
CC       cell-cycle regulation; Lys-29-linked is involved in lysosomal
CC       degradation; Lys-33-linked is involved in kinase modification;
CC       Lys-48-linked is involved in protein degradation via the
CC       proteasome; Lys-63-linked is involved in endocytosis, and DNA-
CC       damage responses. Linear polymer chains formed via attachment by
CC       the initiator Met lead to cell signaling. Ubiquitin is usually
CC       conjugated to Lys residues of target proteins, however, in rare
CC       cases, conjugation to Cys or Ser residues has been observed. When
CC       polyubiquitin is free (unanchored-polyubiquitin), it also has
CC       distinct roles, such as in activation of protein kinases, and in
CC       signaling (By similarity).
CC   -!- FUNCTION: Ribosomal protein L40-1 is a component of the 60S
CC       subunit of the ribosome.
CC   -!- SUBUNIT: Ribosomal protein L40-1 is part of the 60S ribosomal
CC       subunit (By similarity).
CC   -!- SUBCELLULAR LOCATION: Ubiquitin: Cytoplasm (By similarity).
CC       Nucleus (By similarity).
CC   -!- SUBCELLULAR LOCATION: 60S ribosomal protein L40-1: Cytoplasm (By
CC       similarity).
CC   -!- MISCELLANEOUS: Ubiquitin is encoded by 16 different genes.
CC       Ubiquitin is generally synthesized as a polyubiquitin precursor
CC       with tandem head to tail repeats. Often, there is one to three
CC       additional amino-acids after the last repeat, removed in the
CC       mature protein. Alternatively, ubiquitin extension protein is
CC       synthesized as a single copy of ubiquitin fused to a ribosomal
CC       protein (either L40 or S27A) or to an ubiquitin-related protein
CC       (either RUB1 or RUB2). Following translation, extension protein is
CC       cleaved from ubiquitin.
CC   -!- SIMILARITY: In the N-terminal section; belongs to the ubiquitin
CC       family.
CC   -!- SIMILARITY: In the C-terminal section; belongs to the ribosomal
CC       protein L40e family.
CC   -!- SIMILARITY: Contains 1 ubiquitin-like domain.
CC   -!- GENE_FAMILY: HOG000233942 [ FAMILY / ALN / TREE ]
DR   HOGENOM:Arabidopsis_thaliana;AT2G36170;AT2G36170.1;AT2G36170.1.
DR   EMBL; AC006921; - ;
DR   EMBL; AC007135; - ;
DR   EMBL; AF360311; - ;
DR   EMBL; AK317456; - ;
DR   EMBL; AL050300; - ;
DR   EMBL; AL353912; - ;
DR   EMBL; AY035148; - ;
DR   EMBL; AY056360; - ;
DR   EMBL; AY059080; - ;
DR   EMBL; AY085820; - ;
DR   EMBL; J05507; - ;
DR   EMBL; J05508; - ;
DR   EMBL; Z29051; - ;
DR   UniProtKB/Swiss-Prot; B9DHA6; O80715; P19232; P59263; Q38875; Q9LDJ2; Q9LYW1; Q9M0W3; -.
DR   UniProtKB/Swiss-Prot; Q9M1P9; Q9S7X3; -.
DR   EMBL; J05508; AAA32905.1; -; Genomic_DNA.
DR   EMBL; AC006921; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AC007135; AAM15407.1; -; Genomic_DNA.
DR   EMBL; CP002685; AEC09212.1; -; Genomic_DNA.
DR   EMBL; AF360311; AAK26021.1; -; mRNA.
DR   EMBL; AY056360; AAL07246.1; -; mRNA.
DR   EMBL; AK317456; BAH20123.1; -; mRNA.
DR   IPI; IPI00533306; -.
DR   PIR; B36571; B36571.
DR   RefSeq; NP_565836.1; NM_129175.2.
DR   RefSeq; NP_566969.1; NM_115119.3.
DR   UniGene; At.23108; -.
DR   UniGene; At.24656; -.
DR   UniGene; At.35280; -.
DR   ProteinModelPortal; B9DHA6; -.
DR   SMR; B9DHA6; 1-74, 89-128.
DR   STRING; B9DHA6; -.
DR   PRIDE; B9DHA6; -.
DR   EnsemblPlants; AT2G36170.1; AT2G36170.1; AT2G36170.
DR   EnsemblPlants; AT3G52590.1; AT3G52590.1; AT3G52590.
DR   GeneID; 818189; -.
DR   GeneID; 824425; -.
DR   GenomeReviews; BA000014_GR; AT3G52590.
DR   GenomeReviews; CT485783_GR; AT2G36170.
DR   KEGG; ath:AT2G36170; -.
DR   KEGG; ath:AT3G52590; -.
DR   GeneFarm; 382; 38.
DR   TAIR; At2g36170; -.
DR   ProtClustDB; CLSN2688722; -.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:InterPro.
DR   InterPro; IPR001975; Ribosomal_L40e.
DR   InterPro; IPR000626; Ubiquitin.
DR   InterPro; IPR019954; Ubiquitin_CS.
DR   InterPro; IPR019956; Ubiquitin_subgr.
DR   InterPro; IPR019955; Ubiquitin_supergroup.
DR   Pfam; PF01020; Ribosomal_L40e; 1.
DR   Pfam; PF00240; ubiquitin; 1.
DR   PRINTS; PR00348; UBIQUITIN.
DR   SMART; SM00213; UBQ; 1.
DR   PROSITE; PS00299; UBIQUITIN_1; 1.
DR   PROSITE; PS50053; UBIQUITIN_2; 1.
DR   HOGENOMDNA; ARATH_2.PE3825; -.
KW   AT2G36170pg.C_scaffold_1320000031; AT2G36170.1.C_scaffold_1320000031;
KW   Q42202; AC006921; AC007135; AF360311; AK317456; AL050300; AL353912;
KW   AY056360; AY059080; AY085820; J05507; J05508; Z29051;
KW   Complete proteome; Cytoplasm; Isopeptide bond; Nucleus;
KW   Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW   Ubl conjugation.
SQ   SEQUENCE   128 AA;  UNKNOWN MW;  UNKNOWN CRC64;
     MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN
     IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY ARLHPRAVNC RKKKCGHSNQ
     LRPKKKIK
//

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