(data stored in ACNUC8465 zone)
ID DELAS_1; SV 1; empty ; DNA; empty ; PRO; 6767514 BP.
DE Delftia acidovorans SPH-1 chromosome, complete genome.
OS Delftia acidovorans SPH-1
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Delftia.
RX PUBMED; 15240283.
RA Schleheck,D., Knepper,T.P., Fischer,K. and Cook,A.M.;
RT "Mineralization of individual congeners of linear alkylbenzenesulfonate by
RT defined pairs of heterotrophic bacteria";
RL Appl. Environ. Microbiol. 70 (7), 4053-4063 (2004)
RG US DOE Joint Genome Institute
RA Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E.,
RA Tice,H., Pitluck,S., Lowry,S., Clum,A., Schmutz,J., Larimer,F., Land,M.,
RA Hauser,L., Kyrpides,N., Kim,E., Schleheck,D. and Richardson,P.;
RT "Direct Submission";
RL Submitted (05-NOV-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive
RL B100, Walnut Creek, CA 94598-1698, USA
RG NCBI Genome Project
RT "Direct Submission";
RL Submitted (07-JUL-2003) National Center for Biotechnology Information,
RL NIH, Bethesda, MD 20894, USA
CC PROVISIONAL REFSEQ: This record has not yet been subject to final
CC NCBI review. The reference sequence was derived from CP000884.
CC URL -- http://www.jgi.doe.gov
CC JGI Project ID: 4002762
CC Source DNA available from David Schleheck
CC Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de)
CC Delftia acidovorans SPH-1 was isolated from a sewage treatment
CC plant in Germany and is part of a defined three-member bacterial
CC community which completely mineralises representative congeners of
CC linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The
CC community genome was kindly established by DOE-JGI as part of the
CC 2006 Microbes Program (see also JGI Project Id 4003071
CC [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas
CC testosteroni KF-1]). The first-tier organism Parvibaculum
CC lavamentivorans converts LAS surfactants into many
CC sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1
CC represents a second-tier organism by completely degrading some of
CC these SPCs; Comamonas testosteroni degrades a different set of
CC Contacts: David Schleheck (email@example.com)
CC Staffan Kjelleberg (firstname.lastname@example.org)
CC Alasdair Cook (email@example.com)
CC Paul Richardson (firstname.lastname@example.org)
CC Quality assurance done by JGI-Stanford
CC Annotation done by JGI-ORNL and JGI-PGF
CC Finishing done by JGI-PGF
CC Finished microbial genomes have been curated to close all gaps with
CC greater than 98% coverage of at least two independent clones. Each
CC base pair has a minimum q (quality) value of 30 and the total error
CC rate is less than one per 50000.
CC The JGI and collaborators endorse the principles for the
CC distribution and use of large scale sequencing data adopted by the
CC larger genome sequencing community and urge users of this data to
CC follow them. it is our intention to publish the work of this
CC project in a timely fashion and we welcome collaborative
CC interaction on the project and analysis.
CC COMPLETENESS: full length.
FH Key Location/Qualifiers
FT source 1..6767514
FT /mol_type="genomic DNA"
FT /organism="Delftia acidovorans SPH-1"
FT gene 16..1422