(data stored in ACNUC16935 zone)


ID   HS19_PE1247                          STANDARD;      PRT;   128 AA.
AC   HS19_PE1247;
DT   00-JAN-0000 (Rel. 1, Created)
DT   00-JAN-0000 (Rel. 2, Last sequence update)
DT   00-JAN-0000 (Rel. 3, Last annotation update)
DE   RecName: Full=Ubiquitin-60S ribosomal protein L40;AltName:
DE   Full=CEP52;AltName: Full=Ubiquitin A-52 residue ribosomal protein fusion
DE   product 1;Contains: RecName: Full=Ubiquitin;Contains: RecName: Full=60S
DE   ribosomal protein L40;Flags: Precursor; (HS19.PE1247).
GN   Name=UBA52; Synonyms=UBCEP2;
OC   Eukaryota; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia;
OC   Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi;
OC   Sarcopterygii; Tetrapoda; Amniota; Mammalia; Theria; Eutheria;
OC   Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini;
OC   Hominoidea; Hominidae; Homininae; Homo.
OX   NCBI_TaxID=9606;
RN   [0]
RP   -.;
RG   -.;
RL   -.;
CC   -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS HS19.PE1247.
CC       Homo sapiens chromosome 19 GRCh37  sequence 1..59118983 annotated by
CC       Ensembl
CC   -!- FUNCTION: Ubiquitin exists either covalently attached to another
CC       protein, or free (unanchored). When covalently bound, it is
CC       conjugated to target proteins via an isopeptide bond either as a
CC       monomer (monoubiquitin), a polymer linked via different Lys
CC       residues of the ubiquitin (polyubiquitin chains) or a linear
CC       polymer linked via the initiator Met of the ubiquitin (linear
CC       polyubiquitin chains). Polyubiquitin chains, when attached to a
CC       target protein, have different functions depending on the Lys
CC       residue of the ubiquitin that is linked: Lys-6-linked may be
CC       involved in DNA repair; Lys-11-linked is involved in ERAD
CC       (endoplasmic reticulum-associated degradation) and in cell-cycle
CC       regulation; Lys-29-linked is involved in lysosomal degradation;
CC       Lys-33-linked is involved in kinase modification; Lys-48-linked is
CC       involved in protein degradation via the proteasome; Lys-63-linked
CC       is involved in endocytosis, DNA-damage responses as well as in
CC       signaling processes leading to activation of the transcription
CC       factor NF-kappa-B. Linear polymer chains formed via attachment by
CC       the initiator Met lead to cell signaling. Ubiquitin is usually
CC       conjugated to Lys residues of target proteins, however, in rare
CC       cases, conjugation to Cys or Ser residues has been observed. When
CC       polyubiquitin is free (unanchored-polyubiquitin), it also has
CC       distinct roles, such as in activation of protein kinases, and in
CC       signaling.
CC   -!- FUNCTION: Ribosomal protein L40 is a component of the 60S subunit
CC       of the ribosome.
CC   -!- SUBUNIT: Ribosomal protein L40 is part of the 60S ribosomal
CC       subunit (By similarity).
CC   -!- SUBCELLULAR LOCATION: Ubiquitin: Cytoplasm (By similarity).
CC       Nucleus (By similarity).
CC   -!- SUBCELLULAR LOCATION: 60S ribosomal protein L40: Cytoplasm (By
CC       similarity).
CC   -!- MISCELLANEOUS: Ubiquitin is encoded by 4 different genes. UBA52
CC       and RPS27A genes code for a single copy of ubiquitin fused to the
CC       ribosomal proteins L40 and S27a, respectively. UBB and UBC genes
CC       code for a polyubiquitin precursor with exact head to tail
CC       repeats, the number of repeats differ between species and strains.
CC   -!- MISCELLANEOUS: For a better understanding, features related to
CC       ubiquitin are only indicated for the first chain.
CC   -!- SIMILARITY: In the N-terminal section; belongs to the ubiquitin
CC       family.
CC   -!- SIMILARITY: In the C-terminal section; belongs to the ribosomal
CC       protein L40e family.
CC   -!- SIMILARITY: Contains 1 ubiquitin-like domain.
CC       Sequence=AAK31162.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
CC   -!- GENE_FAMILY: HOG000233942 [ FAMILY / ALN / TREE ]
DR   HOGENOM:Homo_sapiens;ENSG00000221983;ENST00000430157;ENSP00000396910.
DR   EMBL; AB362574; - ;
DR   EMBL; AC005253; - ;
DR   EMBL; AF348700; - ;
DR   EMBL; AK314717; - ;
DR   EMBL; BC101830; - ;
DR   EMBL; BC101832; - ;
DR   EMBL; BC143668; - ;
DR   EMBL; CH471106; - ;
DR   EMBL; DQ479851; - ;
DR   EMBL; X56997; - ;
DR   EMBL; X56998; - ;
DR   EMBL; X56999; - ;
DR   EMBL; Y00361; - ;
DR   UniProtKB/Swiss-Prot; P62987; P02248; P02249; P02250; P14793; P62988; Q29120; Q6LBL4; -.
DR   UniProtKB/Swiss-Prot; Q6LDU5; Q8WYN8; Q91887; Q91888; Q9BWD6; Q9BX98; Q9UEF2; Q9UEG1; -.
DR   UniProtKB/Swiss-Prot; Q9UEK8; Q9UPK7; -.
DR   EMBL; X56998; CAA40313.1; -; mRNA.
DR   EMBL; X56997; CAA40312.1; -; Genomic_DNA.
DR   EMBL; X56999; CAA40314.1; -; mRNA.
DR   EMBL; AF348700; AAK31162.1; ALT_INIT; mRNA.
DR   EMBL; AC005253; AAC25582.1; -; Genomic_DNA.
DR   EMBL; Y00361; CAA68439.1; -; mRNA.
DR   IPI; IPI00456429; -.
DR   PIR; S34428; UQHUR.
DR   RefSeq; NP_001029102.1; NM_001033930.1.
DR   RefSeq; NP_003324.1; NM_003333.3.
DR   UniGene; Hs.5308; -.
DR   ProteinModelPortal; P62987; -.
DR   SMR; P62987; 1-76, 89-128.
DR   IntAct; P62987; 2.
DR   MINT; MINT-1137632; -.
DR   STRING; P62987; -.
DR   PhosphoSite; P62987; -.
DR   PRIDE; P62987; -.
DR   Ensembl; ENST00000430157; ENSP00000396910; ENSG00000221983.
DR   Ensembl; ENST00000442744; ENSP00000388107; ENSG00000221983.
DR   GeneID; 7311; -.
DR   KEGG; hsa:7311; -.
DR   CTD; 7311; -.
DR   GeneCards; GC19P018245; -.
DR   HGNC; HGNC:12458; UBA52.
DR   MIM; 191321; gene.
DR   neXtProt; NX_P62987; -.
DR   eggNOG; prNOG07127; -.
DR   InParanoid; P62987; -.
DR   OrthoDB; EOG4V1726; -.
DR   Reactome; REACT_11045; Signaling by Wnt.
DR   Reactome; REACT_11061; Signalling by NGF.
DR   Reactome; REACT_11123; Membrane Trafficking.
DR   Reactome; REACT_13505; Proteasome mediated degradation of PAK-2p34.
DR   Reactome; REACT_13698; Regulation of beta-cell development.
DR   Reactome; REACT_152; Cell Cycle, Mitotic.
DR   Reactome; REACT_1538; Cell Cycle Checkpoints.
DR   Reactome; REACT_15380; Diabetes pathways.
DR   Reactome; REACT_17015; Metabolism of proteins.
DR   Reactome; REACT_1762; 3' -UTR-mediated translational regulation.
DR   Reactome; REACT_21257; Metabolism of RNA.
DR   Reactome; REACT_216; DNA Repair.
DR   Reactome; REACT_24941; Circadian Clock.
DR   Reactome; REACT_25177; RNF125 mediated ubiquitination of RIG-I, MDA5 and IPS-1.
DR   Reactome; REACT_383; DNA Replication.
DR   Reactome; REACT_578; Apoptosis.
DR   Reactome; REACT_6167; Influenza Infection.
DR   Reactome; REACT_6185; HIV Infection.
DR   Reactome; REACT_6850; Cdc20:Phospho-APC/C mediated degradation of Cyclin A.
DR   Reactome; REACT_6900; Immune System.
DR   Reactome; REACT_71; Gene Expression.
DR   Reactome; REACT_8017; APC-Cdc20 mediated degradation of Nek2A.
DR   Reactome; REACT_9417; Signaling by EGFR.
DR   ArrayExpress; P62987; -.
DR   Bgee; P62987; -.
DR   CleanEx; HS_UBA52; -.
DR   Genevestigator; P62987; -.
DR   GermOnline; ENSG00000196084; Homo sapiens.
DR   GO; GO:0005829; C:cytosol; EXP:Reactome.
DR   GO; GO:0030666; C:endocytic vesicle membrane; TAS:Reactome.
DR   GO; GO:0010008; C:endosome membrane; EXP:Reactome.
DR   GO; GO:0005654; C:nucleoplasm; EXP:Reactome.
DR   GO; GO:0005886; C:plasma membrane; TAS:Reactome.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0005515; F:protein binding; IPI:BHF-UCL.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0000187; P:activation of MAPK activity; TAS:Reactome.
DR   GO; GO:0031145; P:anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process; EDR   GO; GO:0006916; P:anti-apoptosis; EXP:Reactome.
DR   GO; GO:0006916; P:anti-apoptosis; EXP:Reactome.
DR   GO; GO:0006915; P:apoptosis; EXP:Reactome.
DR   GO; GO:0016044; P:cellular membrane organization; EXP:Reactome.
DR   GO; GO:0006977; P:DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest; TADR   GO; GO:0006281; P:DNA repair; TAS:Reactome.
DR   GO; GO:0006281; P:DNA repair; TAS:Reactome.
DR   GO; GO:0031018; P:endocrine pancreas development; TAS:Reactome.
DR   GO; GO:0016197; P:endosome transport; TAS:Reactome.
DR   GO; GO:0007173; P:epidermal growth factor receptor signaling pathway; TAS:Reactome.
DR   GO; GO:0000082; P:G1/S transition of mitotic cell cycle; TAS:Reactome.
DR   GO; GO:0007249; P:I-kappaB kinase/NF-kappaB cascade; TAS:Reactome.
DR   GO; GO:0008624; P:induction of apoptosis by extracellular signals; EXP:Reactome.
DR   GO; GO:0045087; P:innate immune response; TAS:Reactome.
DR   GO; GO:0007254; P:JNK cascade; TAS:Reactome.
DR   GO; GO:0000216; P:M/G1 transition of mitotic cell cycle; TAS:Reactome.
DR   GO; GO:0016071; P:mRNA metabolic process; TAS:Reactome.
DR   GO; GO:0002755; P:MyD88-dependent toll-like receptor signaling pathway; EXP:Reactome.
DR   GO; GO:0002756; P:MyD88-independent toll-like receptor signaling pathway; EXP:Reactome.
DR   GO; GO:0042059; P:negative regulation of epidermal growth factor receptor signaling pathway; TAS:Reactome.
DR   GO; GO:0032480; P:negative regulation of type I interferon production; TAS:Reactome.
DR   GO; GO:0051436; P:negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle; EXP:ReacDR   GO; GO:0048011; P:nerve growth factor receptor signaling pathway; TAS:Reactome.
DR   GO; GO:0048011; P:nerve growth factor receptor signaling pathway; TAS:Reactome.
DR   GO; GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; TAS:Reactome.
DR   GO; GO:0051092; P:positive regulation of NF-kappaB transcription factor activity; TAS:Reactome.
DR   GO; GO:0051437; P:positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle; EXP:ReacDR   GO; GO:0000084; P:S phase of mitotic cell cycle; TAS:Reactome.
DR   GO; GO:0000084; P:S phase of mitotic cell cycle; TAS:Reactome.
DR   GO; GO:0051403; P:stress-activated MAPK cascade; TAS:Reactome.
DR   GO; GO:0050852; P:T cell receptor signaling pathway; TAS:Reactome.
DR   GO; GO:0008063; P:Toll signaling pathway; TAS:Reactome.
DR   GO; GO:0034130; P:toll-like receptor 1 signaling pathway; TAS:Reactome.
DR   GO; GO:0034134; P:toll-like receptor 2 signaling pathway; TAS:Reactome.
DR   GO; GO:0034138; P:toll-like receptor 3 signaling pathway; TAS:Reactome.
DR   GO; GO:0034142; P:toll-like receptor 4 signaling pathway; TAS:Reactome.
DR   GO; GO:0006414; P:translational elongation; EXP:Reactome.
DR   GO; GO:0006415; P:translational termination; TAS:Reactome.
DR   GO; GO:0019083; P:viral transcription; TAS:Reactome.
DR   InterPro; IPR001975; Ribosomal_L40e.
DR   InterPro; IPR000626; Ubiquitin.
DR   InterPro; IPR019954; Ubiquitin_CS.
DR   InterPro; IPR019956; Ubiquitin_subgr.
DR   InterPro; IPR019955; Ubiquitin_supergroup.
DR   Pfam; PF01020; Ribosomal_L40e; 1.
DR   Pfam; PF00240; ubiquitin; 1.
DR   SMART; SM00213; UBQ; 1.
DR   HOGENOMDNA; HS19.PE1247; -.
KW   ENSG000002219831755old_1320000031; ENSP000003969107901old_1320000031;
KW   A8CGI2_HUMAN; Q3MIH3_HUMAN; AB362574; AC005253; AF348700; AK314717;
KW   BC101832; BC143668; CH471106; DQ479851; X56997; X56998; X56999; Y00361;
KW   Acetylation; Complete proteome; Cytoplasm; Direct protein sequencing;
KW   Isopeptide bond; Methylation; Nucleus; Phosphoprotein;
KW   Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW   Ubl conjugation.

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