(data stored in ACNUC1122 zone)

HOGENOM: RAT10_PE70

ID   RAT10_PE70                           STANDARD;      PRT;   1153 AA.
AC   RAT10_PE70; Q9GJE0;
DT   00-JAN-0000 (Rel. 1, Created)
DT   00-JAN-0000 (Rel. 2, Last sequence update)
DT   00-JAN-0000 (Rel. 3, Last annotation update)
DE   SubName: Full=MHC class II transactivator type I; (RAT10.PE70).
GN   Name=Ciita; Synonyms=C2ta, CIITA;
OS   RATTUS NORVEGICUS.
OC   Eukaryota; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia;
OC   Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi;
OC   Sarcopterygii; Tetrapoda; Amniota; Mammalia; Theria; Eutheria;
OC   Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae;
OC   Murinae; Rattus.
OX   NCBI_TaxID=10116;
RN   [0]
RP   -.;
RG   -.;
RL   -.;
CC   -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS RAT10.PE70.
CC       Rattus norvegicus chromosome 10 RGSC3.4  sequence 1..110718848
CC       annotated by Ensembl
CC   -!- ANNOTATIONS ORIGIN:Q9GJE0_RAT
CC   -!- GENE_FAMILY: HOG000107439 [ FAMILY / ALN / TREE ]
DR   HOGENOM:Rattus_norvegicus;ENSRNOG00000002659;ENSRNOT00000003572;ENSRNOP00000003572.
DR   EMBL; AF251305; - ;
DR   EMBL; AF251307; - ;
DR   UniProtKB/Swiss-Prot; Q9GJE0; -.
DR   EMBL; AF251305; AAG02181.1; -; mRNA.
DR   IPI; IPI00190599; -.
DR   RefSeq; NP_445981.1; NM_053529.1.
DR   UniGene; Rn.162013; -.
DR   ProteinModelPortal; Q9GJE0; -.
DR   STRING; Q9GJE0; -.
DR   PRIDE; Q9GJE0; -.
DR   GeneID; 85483; -.
DR   KEGG; rno:85483; -.
DR   CTD; 4261; -.
DR   RGD; 619813; Ciita.
DR   GeneTree; ENSGT00590000083026; -.
DR   InParanoid; Q9GJE0; -.
DR   NextBio; 617566; -.
DR   ArrayExpress; Q9GJE0; -.
DR   Genevestigator; Q9GJE0; -.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0006954; P:inflammatory response; IEP:RGD.
DR   GO; GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:RGD.
DR   GO; GO:0045348; P:positive regulation of MHC class II biosynthetic process; IDA:RGD.
DR   GO; GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:RGD.
DR   InterPro; IPR008095; MHC_II_transact.
DR   InterPro; IPR007111; NACHT_NTPase.
DR   PRINTS; PR01719; MHCIIACTVATR.
DR   PROSITE; PS50837; NACHT; 1.
DR   HOGENOMDNA; RAT10.PE70; -.
KW   ENSRNOG00000002659820036002503210000011;
KW   Ciita; Q9GJD8_RAT; Q9GJE0_RAT; AF251305; AF251307.
SQ   SEQUENCE   1153 AA;  UNKNOWN MW;  UNKNOWN CRC64;
     MNHFQAILAQ VQTLLSSQQP RQVRALLDGL LEEELLSREY HCALLHEPDG EALARKISLT
     LLEKGDLDLA FVSWVCNRLQ VPEVERGPNC RDHGGHTLCA TMELGSPEGS YLELLNSDAD
     PLHLYHLYDQ MDLAGEEEIE LNSETDMDTI NCDQFSKLLQ DMEMDEETRE AYANIAELDQ
     YVFQDTQLEG LSKDLFIQHI GPEEGFGENV EGPAESGEKP QKRRFPEEHA MDSKHRKLVP
     PSRTSLNYLD LPAGHIQIFT TLPQGLWQIS GVGTGLSSVL VYHGEMPQVN QLLSSSSPTV
     PSLPESPDRP GSTSPFAPST ADLPGMPEPA LTSRVNETED TTPPSPCQED PEPSIKLPKW
     PESVERFQHS LQDKYQALPG SPSGPLVAME LVRARLERGS NKSQERELAT PDWTERQLAH
     GGLAEVLRVV GDSRRSRETQ VVAVLGKAGQ GKSHWARTVS HIWAQGQLPQ YDFVFYVPCQ
     CLDRPGDTYH LRDLLCPPNL QPLAMDDEVI DHIVRQPDRV LLILDAFEEL EAQDSLLHGP
     CGPLSPEPCS LRGLLAGLFQ RKLLRGCTLL LTARPRGRLA QSLSKADAIF EVPSFSTKQA
     QIYMRHYFEN SGTAGSHDKA LGLLEGQPFL LTHSHSPVLC SAVCQLSKAL LDQGAEAQLP
     CTLTGLYVGL LGPAAQNSPP GALVELAKLA WELGRRHQST LQETQFPSVE VKTWAVAQGL
     MQQTTEAQLA FSSFLLQCFL GAVWLAQCNE MKDKELPQYL ALTPRKKRPY DNWLEGVPRF
     LAGLVFQPRA HCLGALVEPA MAAVADRKRK VLTRYLKRLK LGTLRAGRLL ELLHCAHETQ
     EPGIWKHVSH QLPGHLSFLG TRLTAPDVYV LGRALETASQ DFSLDLRQTG IEPSRLGDLV
     GLSCVTSFRA SLSDTMALWE SLQHQGETQL LQAAEEKFTI EPFKAKSPKD VEDLDSLVQT
     QRLRNPSADA AKDLPAIRDL KKLEFALGPV LGPQAFPTLA KILPAFSSLQ HLDLDSLSEN
     KIGDKGVSKL SATFPQLKAL ETLNLSQNSI TDVGACKLAE ALPALAKSLL RLSLYNNCIC
     DEGAKSLARV LPDMVSLRVM DVQFNKFTAV GAQQLTSSLQ KCPQVETLAM WTPTIPFGVQ
     EHLQQLDARI SLR
//

If you have problems or comments...

PBIL Back to PBIL home page