(data stored in ACNUC16935 zone)

HOGENOM: RAT16_PE320

ID   RAT16_PE320                          STANDARD;      PRT;   128 AA.
AC   RAT16_PE320;
DT   00-JAN-0000 (Rel. 1, Created)
DT   00-JAN-0000 (Rel. 2, Last sequence update)
DT   00-JAN-0000 (Rel. 3, Last annotation update)
DE   RecName: Full=Ubiquitin-60S ribosomal protein L40;AltName: Full=Ubiquitin
DE   A-52 residue ribosomal protein fusion product 1;Contains: RecName:
DE   Full=Ubiquitin;Contains: RecName: Full=60S ribosomal protein L40;
DE   AltName: Full=CEP52;Flags: Precursor; (RAT16.PE320).
GN   Name=Uba52; Synonyms=Ubcep2;
OS   RATTUS NORVEGICUS.
OC   Eukaryota; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia;
OC   Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi;
OC   Sarcopterygii; Tetrapoda; Amniota; Mammalia; Theria; Eutheria;
OC   Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae;
OC   Murinae; Rattus.
OX   NCBI_TaxID=10116;
RN   [0]
RP   -.;
RG   -.;
RL   -.;
CC   -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS RAT16.PE320.
CC       Rattus norvegicus chromosome 16 RGSC3.4  sequence 1..90238779
CC       annotated by Ensembl
CC   -!- ANNOTATIONS ORIGIN:RL40_RAT
CC   -!- FUNCTION: Ubiquitin exists either covalently attached to another
CC       protein, or free (unanchored). When covalently bound, it is
CC       conjugated to target proteins via an isopeptide bond either as a
CC       monomer (monoubiquitin), a polymer linked via different Lys
CC       residues of the ubiquitin (polyubiquitin chains) or a linear
CC       polymer linked via the initiator Met of the ubiquitin (linear
CC       polyubiquitin chains). Polyubiquitin chains, when attached to a
CC       target protein, have different functions depending on the Lys
CC       residue of the ubiquitin that is linked: Lys-6-linked may be
CC       involved in DNA repair; Lys-11-linked is involved in ERAD
CC       (endoplasmic reticulum-associated degradation) and in cell-cycle
CC       regulation; Lys-29-linked is involved in lysosomal degradation;
CC       Lys-33-linked is involved in kinase modification; Lys-48-linked is
CC       involved in protein degradation via the proteasome; Lys-63-linked
CC       is involved in endocytosis, DNA-damage responses as well as in
CC       signaling processes leading to activation of the transcription
CC       factor NF-kappa-B. Linear polymer chains formed via attachment by
CC       the initiator Met lead to cell signaling. Ubiquitin is usually
CC       conjugated to Lys residues of target proteins, however, in rare
CC       cases, conjugation to Cys or Ser residues has been observed. When
CC       polyubiquitin is free (unanchored-polyubiquitin), it also has
CC       distinct roles, such as in activation of protein kinases, and in
CC       signaling (By similarity).
CC   -!- FUNCTION: Ribosomal protein L40 is a component of the 60S subunit
CC       of the ribosome.
CC   -!- SUBUNIT: Ribosomal protein L40 is part of the 60S ribosomal
CC       subunit (By similarity).
CC   -!- SUBCELLULAR LOCATION: Ubiquitin: Cytoplasm (By similarity).
CC       Nucleus (By similarity).
CC   -!- SUBCELLULAR LOCATION: 60S ribosomal protein L40: Cytoplasm (By
CC       similarity).
CC   -!- MISCELLANEOUS: Ubiquitin is encoded by 4 different genes. Uba52
CC       and Rps27a genes code for a single copy of ubiquitin fused to the
CC       ribosomal proteins L40 and S27a, respectively. UBB and UBC genes
CC       code for a polyubiquitin precursor with exact head to tail
CC       repeats, the number of repeats differ between species and strains.
CC   -!- SIMILARITY: In the N-terminal section; belongs to the ubiquitin
CC       family.
CC   -!- SIMILARITY: In the C-terminal section; belongs to the ribosomal
CC       protein L40e family.
CC   -!- SIMILARITY: Contains 1 ubiquitin-like domain.
CC   -!- GENE_FAMILY: HOG000233942 [ FAMILY / ALN / TREE ]
DR   HOGENOM:Rattus_norvegicus;ENSRNOG00000019974;ENSRNOT00000027073;ENSRNOP00000027073.
DR   EMBL; BC060312; - ;
DR   EMBL; BC061544; - ;
DR   EMBL; BC070919; - ;
DR   EMBL; D16554; - ;
DR   EMBL; U25064; - ;
DR   EMBL; U75407; - ;
DR   EMBL; X81839; - ;
DR   EMBL; X82636; - ;
DR   UniProtKB/Swiss-Prot; P62986; P02248; P02249; P02250; P14793; P62989; Q29120; Q63446; -.
DR   UniProtKB/Swiss-Prot; Q91887; Q91888; -.
DR   EMBL; X82636; CAA57958.1; -; mRNA.
DR   EMBL; U25064; AAC52495.1; -; mRNA.
DR   IPI; IPI00969317; -.
DR   RefSeq; NP_113875.1; NM_031687.3.
DR   UniGene; Rn.110618; -.
DR   UniGene; Rn.4300; -.
DR   ProteinModelPortal; P62986; -.
DR   SMR; P62986; 1-76, 89-128.
DR   STRING; P62986; -.
DR   PRIDE; P62986; -.
DR   Ensembl; ENSRNOT00000027073; ENSRNOP00000027073; ENSRNOG00000019974.
DR   GeneID; 64156; -.
DR   KEGG; rno:64156; -.
DR   UCSC; NM_031687; rat.
DR   CTD; 7311; -.
DR   RGD; 68344; Uba52.
DR   eggNOG; roNOG13277; -.
DR   InParanoid; P62986; -.
DR   OMA; YNCEKMI; -.
DR   OrthoDB; EOG4V1726; -.
DR   NextBio; 622912; -.
DR   ArrayExpress; P62986; -.
DR   Genevestigator; P62986; -.
DR   GermOnline; ENSRNOG00000004426; Rattus norvegicus.
DR   GermOnline; ENSRNOG00000019974; Rattus norvegicus.
DR   GermOnline; ENSRNOG00000028756; Rattus norvegicus.
DR   GermOnline; ENSRNOG00000032872; Rattus norvegicus.
DR   GermOnline; ENSRNOG00000034246; Rattus norvegicus.
DR   GermOnline; ENSRNOG00000037930; Rattus norvegicus.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:InterPro.
DR   InterPro; IPR001975; Ribosomal_L40e.
DR   InterPro; IPR000626; Ubiquitin.
DR   InterPro; IPR019954; Ubiquitin_CS.
DR   InterPro; IPR019956; Ubiquitin_subgr.
DR   InterPro; IPR019955; Ubiquitin_supergroup.
DR   Pfam; PF01020; Ribosomal_L40e; 1.
DR   Pfam; PF00240; ubiquitin; 1.
DR   PRINTS; PR00348; UBIQUITIN.
DR   SMART; SM00213; UBQ; 1.
DR   PROSITE; PS00299; UBIQUITIN_1; 1.
DR   PROSITE; PS50053; UBIQUITIN_2; 1.
DR   HOGENOMDNA; RAT16.PE320; -.
KW   ENSRNOG00000019974820036002503210000011;
KW   Uba52; RL40_RAT; UBIQ_RAT; P97621_RAT; Q6P7R7_RAT; BC060312; BC061544;
KW   D16554; U25064; U75407; X81839; X82636;
KW   Acetylation; Complete proteome; Cytoplasm; Direct protein sequencing;
KW   Isopeptide bond; Methylation; Nucleus; Phosphoprotein;
KW   Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW   Ubl conjugation.
SQ   SEQUENCE   128 AA;  UNKNOWN MW;  UNKNOWN CRC64;
     MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN
     IQKESTLHLV LRLRGGIIEP SLRQLAQKYN CDKMICRKCY ARLHPRAVNC RKKKCGHTNN
     LRPKKKVK
//

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