(data stored in ACNUC11299 zone)

HOGENOM: THAPS_1_PE245

ID   THAPS_1_PE245                        STANDARD;      PRT;   1627 AA.
AC   THAPS_1_PE245; B8BQ02;
DT   00-JAN-0000 (Rel. 1, Created)
DT   00-JAN-0000 (Rel. 2, Last sequence update)
DT   00-JAN-0000 (Rel. 3, Last annotation update)
DE   RecName: Full=DNA-directed RNA polymerase; EC=2.7.7 6; (THAPS_1.PE245).
GN   Name=RPB1; ORFNames=THAPSDRAFT_168;
OS   THALASSIOSIRA PSEUDONANA.
OC   Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae;
OC   Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira.
OX   NCBI_TaxID=35128;
RN   [0]
RP   -.;
RG   -.;
RL   -.;
CC   -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS THAPS_1.PE245.
CC       Thalassiosira pseudonana chromosome 1 Thaps3 full sequence 1..3042585
CC       annotated by Ensembl Genomes
CC   -!- ANNOTATIONS ORIGIN:B8BQ02_THAPS
CC   -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
CC       + RNA(n+1).
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC   -!- GENE_FAMILY: HOG000222975 [ FAMILY / ALN / TREE ]
DR   HOGENOM:Thalassiosira_pseudonana;THAPS168;THAPS168;THAPS168.
DR   EMBL; CM000638; - ;
DR   UniProtKB/Swiss-Prot; B8BQ02; -.
DR   EMBL; CM000638; EED95701.1; -; Genomic_DNA.
DR   RefSeq; XP_002286060.1; XM_002286024.1.
DR   GeneID; 7453440; -.
DR   KEGG; tps:THAPSDRAFT_168; -.
DR   ProtClustDB; CLSN2685306; -.
DR   GO; GO:0005665; C:DNA-directed RNA polymerase II, core complex; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0006366; P:transcription from RNA polymerase II promoter; IEA:InterPro.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR000684; RNA_pol_II_repeat_euk.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR007075; RNA_pol_Rpb1_6.
DR   InterPro; IPR007073; RNA_pol_Rpb1_7.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   Pfam; PF04992; RNA_pol_Rpb1_6; 1.
DR   Pfam; PF04990; RNA_pol_Rpb1_7; 1.
DR   SMART; SM00663; RPOLA_N; 1.
DR   PROSITE; PS00115; RNA_POL_II_REPEAT; 1.
DR   HOGENOMDNA; THAPS_1.PE245; -.
KW   Thaps1689180019671820036002503210000011;
KW   B8BQ02; CM000638;
KW   Complete proteome; DNA-directed RNA polymerase;
KW   Nucleotidyltransferase; Reference proteome; Transcription;
KW   Transferase.
SQ   SEQUENCE   1627 AA;  UNKNOWN MW;  UNKNOWN CRC64;
     MAPRKDGTAR EAGAISLSQA STNFGHSSAR LRRIKKLQFG IINPEELRQY SVTQAITVNG
     RKIPAGVTRY ETYMSGQPVY GGVNDPRLGD LHDKSDPGYF GHIELARPVY HQGFIDVTLK
     ALRCVCFHCS RITMEDTEYK FQRARQIRNR KRRLDAMHAL IRPKKKCDHC NGYQPKYTKV
     GLHVEIEYAD EMERVPGSSG DKKQFMSAQK AVDIFKKMRD DEVKALGLDV TWARPEWMCV
     SVMPVPPLHV RPSVVMGGGA QSSEDDLTHQ LVNIVKSNIA LKTAIQNGEP NIIVEQFEQA
     LQHNVAAFVN NEMRGMPQIT QRSGRPLKTL AQRLKAKEGR IRGNLMGKRV DFSARTVITA
     DPNLGIHQVG VPRSVAMNLT VPTRVTPFNI QELSALVANG PTEHPGAKHI IRSDGLRIDL
     RYVKNKSDLL LANGWIVERH LRDGDIVLFN RQPSLHKMSI MGHMAKVLDW STFRLNLSCT
     SPYNADFDGD EMNLHVPQSL PARAEAELMM HSPRVIVSGQ SNRPVMGIVQ DSLLAVQKMT
     KRDVFVKKDL MMNILMWVED WDGRIPPPAI YRPEELWTGK QIMSMILPKI NLTGKANNGG
     PGPNTFNAYD NLVRVMEGEL IEGTIDKKTI GSGMGGLIHT AWLDVGHEDT ARFMNQTQVV
     TNYWVLQSSF SIGVCDTIAD FATMEQIAST INKAKLQVLD LVRQGQRGEL ETQPGRTMIE
     SFEQFVNKVL NTARDHAGKS AQASLDETNS VKAMVTAGSK GSFINISQII ACVGQQNVEG
     NRIPYGFKRR TLPHFSKDDL GPESRGFVEN SYLSGLTPQE FFFHAMGGRE GLIDTACKTA
     ETGYIQRRLV KAMETVMARY DGTLRTSGGQ IVQFLYGEDG MDAVWIERQS FDSLTLNKRE
     FDERYLLHSD DPDFGYDDQN IPFLEAEVIE DCRHNPEVQQ MLDREMEVLK EDQAMLRIIM
     ANREAGRESD VNSYAPGNVK RVIQNALRQF QIDKGLPSNL HPKDVIEKIE AMLRRLVVVV
     GDDLLSVEAQ NNATTLYRIL IRSYLASKRV LREYRLSEAA LIWVLGEIEA RFHHAKVSPG
     EMAGVLAAQS IGEPATQMTL NTFHYAGVSA KNVTLGVPRL KEIINVAKTV KTPGLTIYLQ
     NHVSGDADVA KLVHSMIEYT VLTDLTKLTE IYYDPDPVNT IVAKDREFVK EYYEMGEETE
     EDLRRLSPWV LRIELNQVVM VDKKIKMNEI AAEIANEYGS DLNVLVSDDN ADDLVARIRI
     VNDLPMVQGM DEDGNPIMTD DDVELGQEDD VFLKRLEKNM LHTLKLRGVD DVKKVFMRGG
     AKKTVWDDEK GFGITDEWVL ETDGTNLMSV LGIDYVDATR TISNDIVEVF MVLGIEGVRA
     AILSELRNVI SFDGSYVNYR HLACLVDVMT MHGHLMAVDR HGINRVESGP LLRCSFEETV
     DMLNDAACFA EEEVLRGVTE NIMMGQLARV GTGDMDLLLD EQKVLLWMDL RQTRNWGSWA
     ALVCQHRMLP LHSRLLKCLH LLMLVDSVLR LGDSPLVHTA TSGKLNDSWY IPRHALSSFF
     VSNLLLRCPS LQTGIFSNSN KSCIFTNKPC LQPYVTCVQS YDPTSPAYSP TSPAYSPTSP
     VSLLFVC
//

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