(data stored in ACNUC9435 zone)

HOGENOM: THIK1_1_PE1000

ID   THIK1_1_PE1000                       STANDARD;      PRT;   180 AA.
AC   THIK1_1_PE1000; D5WZ78;
DT   00-JAN-0000 (Rel. 1, Created)
DT   00-JAN-0000 (Rel. 2, Last sequence update)
DT   00-JAN-0000 (Rel. 3, Last annotation update)
DE   RecName: Full=Ribosome maturation factor rimM; (THIK1_1.PE1000).
GN   Name=rimM; OrderedLocusNames=Tint_1022;
OS   THIOMONAS INTERMEDIA K12.
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.
OX   NCBI_TaxID=75379;
RN   [0]
RP   -.;
RG   -.;
RL   -.;
CC   -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS THIK1_1.PE1000.
CC       Thiomonas intermedia K12 chromosome, complete genome.
CC       genome.
CC   -!- ANNOTATIONS ORIGIN:D5WZ78_THIK1
CC   -!- FUNCTION: An accessory protein needed during the final step in the
CC       assembly of 30S ribosomal subunit, possibly for assembly of the
CC       head region. Probably interacts with S19. Essential for efficient
CC       processing of 16S rRNA. May be needed both before and after rbfA
CC       during the maturation of 16S rRNA. It has affinity for free
CC       ribosomal 30S subunits but not for 70S ribosomes (By similarity).
CC   -!- SUBUNIT: Binds ribosomal protein S19 (By similarity).
CC   -!- SUBCELLULAR LOCATION: Cytoplasm (By similarity).
CC   -!- DOMAIN: The PRC barrel domain binds ribosomal protein S19 (By
CC       similarity).
CC   -!- SIMILARITY: Belongs to the rimM family.
CC   -!- SIMILARITY: Contains 1 PRC barrel domain.
CC   -!- GENE_FAMILY: HOG000220989 [ FAMILY / ALN / TREE ]
DR   UniProtKB/Swiss-Prot; D5WZ78; -.
DR   EMBL; CP002021; ADG30416.1; -; Genomic_DNA.
DR   RefSeq; YP_003642746.1; NC_014153.1.
DR   ProteinModelPortal; D5WZ78; -.
DR   GeneID; 9151753; -.
DR   GenomeReviews; CP002021_GR; Tint_1022.
DR   KEGG; tin:Tint_1022; -.
DR   GO; GO:0005840; C:ribosome; IEA:InterPro.
DR   GO; GO:0043022; F:ribosome binding; IEA:InterPro.
DR   GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:HAMAP.
DR   GO; GO:0006364; P:rRNA processing; IEA:InterPro.
DR   HAMAP; MF_00014; Ribosome_mat_RimM; 1; -.
DR   InterPro; IPR011961; 16S_RimM.
DR   InterPro; IPR007903; PRC_barrel.
DR   InterPro; IPR011033; PRC_barrell-like.
DR   InterPro; IPR002676; RimM.
DR   InterPro; IPR009000; Transl_elong_init/rib_B-barrel.
DR   Gene3D; G3DSA:2.40.30.60; G3DSA:2.40.30.60; 1.
DR   Pfam; PF05239; PRC; 1.
DR   Pfam; PF01782; RimM; 1.
DR   SUPFAM; SSF50346; PRCH_cytoplasmic; 1.
DR   SUPFAM; SSF50447; Translat_factor; 1.
DR   TIGRFAMs; TIGR02273; 16S_RimM; 1.
DR   HOGENOMDNA; THIK1_1.PE1000; -.
KW   16S rRNA processing protein RimM;
KW   Chaperone; Complete proteome; Cytoplasm; Ribosome biogenesis.
SQ   SEQUENCE   180 AA;  UNKNOWN MW;  UNKNOWN CRC64;
     MAIPDDLYLV GHILDAWGVR GWVKVAPDAP QATALLKSKT WWLSRPGFEN EPTPIAVRLV
     RRHGSALVAL LEGPEDRSGA EALRGRQIAV RRADFPPPDE GEFYWADLIG CEVRSPEGAD
     LGRVIGLMES AAHAVLRVQI PQASADAKPR ERLIPFVEAY IVSVDLPAKT IIALWDASYD
//

If you have problems or comments...

PBIL Back to PBIL home page