, including all inherited members.
| closeDatabase() | bpp::RAA | |
| createEmptyList(const std::string &listname, const std::string &kind=RaaList::LIST_SEQUENCES) | bpp::RAA | |
| deleteList(RaaList *list) | bpp::RAA | |
| freeSpeciesTree(RaaSpeciesTree *tree) | bpp::RAA | |
| getAnnotLineAtAddress(RaaAddress address) | bpp::RAA | |
| getAttributes(const std::string &name_or_accno) | bpp::RAA | |
| getAttributes(int seqrank) | bpp::RAA | |
| getCurrentAnnotAddress() | bpp::RAA | |
| getDirectFeature(const std::string &seqname, const std::string &featurekey, const std::string &listname, const std::string &matching="") | bpp::RAA | |
| getFirstAnnotLine(int seqrank) | bpp::RAA | |
| getNextAnnotLine() | bpp::RAA | |
| getNextFeature(void *opaque) | bpp::RAA | |
| getSeq(const std::string &name_or_accno, int maxlength=100000) | bpp::RAA | |
| getSeq(int seqrank, int maxlength=100000) | bpp::RAA | |
| getSeqFrag(int seqrank, int first, int length, std::string &sequence) | bpp::RAA | |
| getSeqFrag(const std::string &name_or_accno, int first, int length, std::string &sequence) | bpp::RAA | |
| interruptGetAnyFeature(void *opaque) | bpp::RAA | |
| keywordPattern(const std::string &pattern) | bpp::RAA | |
| knownDatabases(vector< std::string > &name, vector< std::string > &description) | bpp::RAA | |
| listAllFeatureKeys() | bpp::RAA | |
| listDirectFeatureKeys() | bpp::RAA | |
| loadSpeciesTree(bool showprogress=true) | bpp::RAA | |
| nextMatchingKeyword(std::string &matching) | bpp::RAA | |
| openDatabase(const std::string &dbname, char *(*getpasswordf)(void *)=NULL, void *p=NULL) | bpp::RAA | |
| prepareGetAnyFeature(int seqrank, const std::string &featurekey) | bpp::RAA | |
| processQuery(const std::string &query, const std::string &listname) | bpp::RAA | |
| RAA(const std::string &dbname, int port=5558, const std::string &server="pbil.univ-lyon1.fr") | bpp::RAA | |
| RAA(int port=5558, const std::string &server="pbil.univ-lyon1.fr") | bpp::RAA | |
| raa_data (defined in bpp::RAA) | bpp::RAA | [protected] |
| RaaList (defined in bpp::RAA) | bpp::RAA | [friend] |
| translateCDS(int seqrank) | bpp::RAA | |
| translateCDS(const std::string &name) | bpp::RAA | |
| translateInitCodon(int seqrank) | bpp::RAA | |
| ~RAA() | bpp::RAA | |
