, including all inherited members.
closeDatabase() | bpp::RAA | |
createEmptyList(const std::string &listname, const std::string &kind=RaaList::LIST_SEQUENCES) | bpp::RAA | |
deleteList(RaaList *list) | bpp::RAA | |
freeSpeciesTree(RaaSpeciesTree *tree) | bpp::RAA | |
getAnnotLineAtAddress(RaaAddress address) | bpp::RAA | |
getAttributes(const std::string &name_or_accno) | bpp::RAA | |
getAttributes(int seqrank) | bpp::RAA | |
getCurrentAnnotAddress() | bpp::RAA | |
getDirectFeature(const std::string &seqname, const std::string &featurekey, const std::string &listname, const std::string &matching="") | bpp::RAA | |
getFirstAnnotLine(int seqrank) | bpp::RAA | |
getNextAnnotLine() | bpp::RAA | |
getNextFeature(void *opaque) | bpp::RAA | |
getSeq(const std::string &name_or_accno, int maxlength=100000) | bpp::RAA | |
getSeq(int seqrank, int maxlength=100000) | bpp::RAA | |
getSeqFrag(int seqrank, int first, int length, std::string &sequence) | bpp::RAA | |
getSeqFrag(const std::string &name_or_accno, int first, int length, std::string &sequence) | bpp::RAA | |
interruptGetAnyFeature(void *opaque) | bpp::RAA | |
keywordPattern(const std::string &pattern) | bpp::RAA | |
knownDatabases(vector< std::string > &name, vector< std::string > &description) | bpp::RAA | |
listAllFeatureKeys() | bpp::RAA | |
listDirectFeatureKeys() | bpp::RAA | |
loadSpeciesTree(bool showprogress=true) | bpp::RAA | |
nextMatchingKeyword(std::string &matching) | bpp::RAA | |
openDatabase(const std::string &dbname, char *(*getpasswordf)(void *)=NULL, void *p=NULL) | bpp::RAA | |
prepareGetAnyFeature(int seqrank, const std::string &featurekey) | bpp::RAA | |
processQuery(const std::string &query, const std::string &listname) | bpp::RAA | |
RAA(const std::string &dbname, int port=5558, const std::string &server="pbil.univ-lyon1.fr") | bpp::RAA | |
RAA(int port=5558, const std::string &server="pbil.univ-lyon1.fr") | bpp::RAA | |
raa_data (defined in bpp::RAA) | bpp::RAA | [protected] |
RaaList (defined in bpp::RAA) | bpp::RAA | [friend] |
translateCDS(int seqrank) | bpp::RAA | |
translateCDS(const std::string &name) | bpp::RAA | |
translateInitCodon(int seqrank) | bpp::RAA | |
~RAA() | bpp::RAA | |