This table was extracted from HOPPSIGEN release 4.0. Only families containing more than 10 sequences and related to a known gene (not predicted) are described.
Human: 51 most abundant families
| family name | number of sequences | number of taxons | description |
| HOP000259 | 61 | 1 | HS12_55.PE33 ENSG00000111057 K1CR_HUMAN Keratin, type I cytoskeletal 18 (Cytokeratin 18) (K18) (CK 18). |
| HOP000788 | 56 | 1 | HS19_16.PE1 ENSG00000185385 O7AH_HUMAN Olfactory receptor 7A17. |
| HOP000290 | 55 | 1 | HS12_7.PE37 ENSG00000111640 G3P1_HUMAN Glyceraldehyde 3-phosphate dehydrogenase, muscle (EC 1.2.1.12) (GAPDH). G3P2_HUMAN Glyceraldehyde 3-phosphate dehydrogenase, liver (EC 1.2.1.12) (GAPDH). |
| HOP000260 | 42 | 1 | HS12_55.PE34 ENSG00000170421 K2C8_HUMAN Keratin, type II cytoskeletal 8 (Cytokeratin 8) (K8) (CK 8). |
| HOP001151 | 40 | 1 | HS21_30.PE9 Q96N32 Hypothetical protein FLJ31471. |
| HOP001484 | 36 | 1 | HS4_113.PE7 ENSG00000109475 RL34_HUMAN 60S ribosomal protein L34. |
| HOP000311 | 35 | 1 | HS13_10.PE2 ENSG00000122026 RL21_HUMAN 60S ribosomal protein L21. |
| HOP001706 | 33 | 1 | HS6_136.PE11 ENSG00000112306 RS12_HUMAN 40S ribosomal protein S12. |
| HOP000723 | 25 | 1 | HS17_9.PE30 ENSG00000161970 RL26_HUMAN 60S ribosomal protein L26. |
| HOP001535 | 24 | 1 | HS4_41.PE2 ENSG00000163682 RL9_HUMAN 60S ribosomal protein L9. |
| HOP001949 | 23 | 1 | HSX_71.PE3 ENSG00000102314 RS4_HUMAN 40S ribosomal protein S4, X isoform (Single copy abundant mRNA protein) (SCR10). |
| HOP001372 | 21 | 1 | HS2_93.PE5 ENSG00000131426 KV1C_HUMAN Ig kappa chain V-I region Bi. KV1I_HUMAN Ig kappa chain V-I region HK101 precursor (Fragment). KV1N_HUMAN Ig kappa chain V-I region OU. |
| HOP001368 | 20 | 1 | HS2_92.PE27 ENSG00000169769 KV3A_HUMAN Ig kappa chain V-III region B6. KV3B_HUMAN Ig kappa chain V-III region SIE. KV3C_HUMAN Ig kappa chain V-III region NG9 precursor (Fragment). KV3D_HUMAN Ig kappa chain V-III region Ti. KV3E_HUMAN Ig kappa chain V-III region WOL. KV3G_HUMAN Ig kappa chain V-III region GOL (Rheumatoid factor). KV3K_HUMAN Ig kappa chain V-III region IARC/BL41 precursor. KV3L_HUMAN Ig kappa chain V-III region HAH precursor. KV3M_HUMAN Ig kappa chain V-III region HIC precursor. |
| HOP001073 | 20 | 1 | HS1_6.PE7 ENSG00000116251 RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated protein) (EBER associated protein) (EAP) (Heparin binding protein HBp15). |
| HOP000070 | 20 | 1 | HS10_83.PE2 ENSG00000138326 RS24_HUMAN 40S ribosomal protein S24 (S19). |
| HOP000454 | 19 | 1 | HS15_36.PE1 Q9UHA3 60S ribosomal protein L30 isolog (MY024 protein) (RPL24) (Chromosome 15 open reading frame 15). |
| HOP001834 | 18 | 1 | HS8_76.PE11 ENSG00000147604 RL7_HUMAN 60S ribosomal protein L7. |
| HOP001656 | 18 | 1 | HS5_42.PE2 ENSG00000145592 RL37_HUMAN 60S ribosomal protein L37 (G1.16). |
| HOP001447 | 18 | 1 | HS3_25.PE4 ENSG00000174748 RL15_HUMAN 60S ribosomal protein L15. |
| HOP001901 | 17 | 1 | HSX_154.PE5 ENSG00000147403 RL10_HUMAN 60S ribosomal protein L10 (QM protein) (Tumor suppressor QM) (Laminin receptor homolog). |
| HOP001128 | 17 | 1 | HS20_50.PE10 Q13404 DNA-binding protein (EC 6.3.2.19) (DJ1185N5.1.4) (Ubiquitin- conjugating enzyme E2 variant 1 (Isoform 4, CROC-1B)) (Ubiquitin- protein ligase) (Ubiquitin carrier protein). Q9UM48 UEV1As (EC 6.3.2.19) (Ubiquitin-conjugating enzyme E2) (Ubiquitin- protein ligase) (Ubiquitin carrier protein). Q9UM49 UEV1Bs (EC 6.3.2.19) (Ubiquitin-conjugating enzyme E2) (Ubiquitin- protein ligase) (Ubiquitin carrier protein) (Fragment). |
| HOP000315 | 17 | 1 | HS13_13.PE6 ENSG00000132967 HMG1_HUMAN High mobility group protein 1 (HMG-1). |
| HOP001549 | 16 | 1 | HS4_72.PE1 ENSG00000109176 UDBF_HUMAN UDP-glucuronosyltransferase 2B15 precursor, microsomal (EC 2.4.1.17) (UDPGT) (UDPGTH-3) (HLUG4). |
| HOP000871 | 16 | 1 | HS19_55.PE66 ENSG00000087086 FRIL_HUMAN Ferritin light chain (Ferritin L subunit). |
| HOP000870 | 16 | 1 | HS19_55.PE49 ENSG00000063177 RL18_HUMAN 60S ribosomal protein L18. |
| HOP000006 | 16 | 1 | HS10_102.PE19 ENSG00000171314 PMG1_HUMAN Phosphoglycerate mutase 1 (EC 5.4.2.1) (EC 5.4.2.4) (EC 3.1.3.13) (Phosphoglycerate mutase isozyme B) (PGAM-B) (BPG-dependent PGAM 1). |
| HOP001258 | 15 | 1 | HS2_179.PE13 ENSG00000170202 H33_HUMAN Histone H3.3 (H3.A) (H3.B) (H3.3Q). |
| HOP000173 | 15 | 1 | HS11_67.PE33 Q9UID3 ANG2 (Chromosome 11 open reading frame2). |
| HOP001894 | 14 | 1 | HSX_140.PE2 O60801 |
| HOP001304 | 14 | 1 | HS2_243.PE2 ENSG00000157985 CEG2_HUMAN Centaurin gamma 2. |
| HOP000153 | 14 | 1 | HS11_63.PE3 ENSG00000167996 FRIH_HUMAN Ferritin heavy chain (Ferritin H subunit). |
| HOP001266 | 13 | 1 | HS2_182.PE4 Q96EN5 |
| HOP000625 | 13 | 1 | HS17_39.PE1 ENSG00000108298 RL19_HUMAN 60S ribosomal protein L19. |
| HOP000475 | 13 | 1 | HS15_50.PE4 ENSG00000137818 RLA1_HUMAN 60S acidic ribosomal protein P1. |
| HOP000365 | 13 | 1 | HS14_33.PE8 Q9C013 Ninein isotype 2. Q9HBY5 Ninein centrosomal protein (Ninein centrosomal protein isoform A) (Ninein centrosomal protein isoform B) (Fragment). |
| HOP000104 | 13 | 1 | HS11_126.PE2 ENSG00000109971 HS7C_HUMAN Heat shock cognate 71 kDa protein. |
| HOP001008 | 12 | 1 | HS1_231.PE6 ENSG00000143632 ACTS_HUMAN Actin, alpha skeletal muscle (Alpha-actin 1). |
| HOP000699 | 12 | 1 | HS17_76.PE20 ENSG00000132475 H33_HUMAN Histone H3.3 (H3.A) (H3.B) (H3.3Q). |
| HOP000357 | 12 | 1 | HS14_21.PE9 ENSG00000150527 MEA6_HUMAN Meningioma-expressed antigen 6/11 (MEA6) (MEA11). |
| HOP000318 | 12 | 1 | HS13_28.PE10 ENSG00000133112 TCTP_HUMAN Translationally controlled tumor protein (TCTP) (p23) (Histamine- releasing factor) (HRF). |
| HOP001789 | 11 | 1 | HS7_26.PE7 ENSG00000172115 CYC_HUMAN Cytochrome c. |
| HOP001272 | 11 | 1 | HS2_203.PE4 ENSG00000115541 CH10_HUMAN 10 kDa heat shock protein, mitochondrial (Hsp10) (10 kDa chaperonin) (CPN10). |
| HOP000802 | 11 | 1 | HS19_19.PE12 ENSG00000006717 RL40_HUMAN 60S ribosomal protein L40 (CEP52). UBIQ_HUMAN Ubiquitin. |
| HOP000643 | 11 | 1 | HS17_42.PE9 ENSG00000131469 RL27_HUMAN 60S ribosomal protein L27. |
| HOP000487 | 11 | 1 | HS15_64.PE17 ENSG00000184779 RS17_HUMAN 40S ribosomal protein S17. |
| HOP000413 | 11 | 1 | HS14_74.PE3 ENSG00000100764 PRS4_HUMAN 26S protease regulatory subunit 4 (P26s4). |
| HOP001849 | 10 | 1 | HS9_133.PE8 ENSG00000148303 RL7A_HUMAN 60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X polypeptide). |
| HOP001677 | 10 | 1 | HS5_78.PE10 Q9NW66 Hypothetical protein. |
| HOP001614 | 10 | 1 | HS5_154.PE16 ENSG00000164587 RS14_HUMAN 40S ribosomal protein S14 (PRO2640). |
| HOP000560 | 10 | 1 | HS16_58.PE17 Q9Y2Y0 ARF-like 2 binding protein BART1 (Binder of ARL TWO). |
| HOP000142 | 10 | 1 | HS11_58.PE37 Q8NH29 Seven transmembrane helix receptor. |
Mouse: 27 most abundant families
| family name | number of sequences | number of taxons | description |
| HOP002655 | 56 | 1 | MM2_25.PE33 RL7A_MOUSE 60S ribosomal protein L7a (Surfeit locus protein 3). |
| HOP002372 | 36 | 1 | MM16_31.PE13 R35A_MOUSE 60S ribosomal protein L35a. |
| HOP002062 | 36 | 1 | MM11_116.PE18 Q9D0H3 10 days embryo cDNA, RIKEN full-length enriched library, clone:2610017D13, full insert sequence. |
| HOP003153 | 24 | 1 | MM9_95.PE8 CYPH_MOUSE |
| HOP002311 | 21 | 1 | MM15_2.PE14 Q9D823 Adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010311G18:homolog to 60S ribosomal protein L37 (G1.16), full insert sequence. |
| HOP002250 | 20 | 1 | MM14_11.PE10 Q9CWI5 ES cells cDNA, RIKEN full-length enriched library, clone:2410045L15:homolog to 60S ribosomal protein L15, full insert sequence. |
| HOP002100 | 20 | 1 | MM11_68.PE10 RL26_HUMAN 60S ribosomal protein L26. |
| HOP002141 | 19 | 1 | MM11_98.PE10 RL19_HUMAN 60S ribosomal protein L19. |
| HOP003080 | 18 | 1 | MM8_68.PE41 UBIQ_HUMAN Ubiquitin. |
| HOP002079 | 15 | 1 | MM11_27.PE11 R27A_MOUSE 40S ribosomal protein S27a. |
| HOP002513 | 14 | 1 | MM19_30.PE9 RL9_MOUSE 60S ribosomal protein L9. |
| HOP003033 | 13 | 1 | MM7_67.PE19 RS17_MOUSE 40S ribosomal protein S17. |
| HOP002664 | 13 | 1 | MM2_38.PE7 Q8R102 Ribosomal protein L35. |
| HOP002113 | 13 | 1 | MM11_73.PE3 Q8VF79 Olfactory receptor MOR135-14 (Olfactory receptor GA_x6K02T2P1NL-3676608-3675670). |
| HOP003024 | 12 | 1 | MM7_33.PE14 LDHA_MOUSE L-lactate dehydrogenase A chain (EC 1.1.1.27) (LDH-A) (LDH muscle subunit) (LDH-M). |
| HOP002430 | 12 | 1 | MM17_30.PE48 RS18_HUMAN 40S ribosomal protein S18 (KE-3) (KE3). |
| HOP003020 | 11 | 1 | MM7_31.PE37 Q9DB79 Ribosomal protein S11. |
| HOP002686 | 11 | 1 | MM2_89.PE22 Q8VG21 Olfactory receptor MOR230-4 (Olfactory receptor GA_x6K02T2Q125-50163514-50162588). |
| HOP002416 | 11 | 1 | MM17_24.PE28 RU1C_MOUSE U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C protein) (U1-C). |
| HOP002257 | 11 | 1 | MM14_17.PE20 RS24_HUMAN 40S ribosomal protein S24 (S19). |
| HOP003028 | 10 | 1 | MM7_42.PE4 RS12_MOUSE 40S ribosomal protein S12. |
| HOP002700 | 10 | 1 | MM3_130.PE4 RL34_MOUSE 60S ribosomal protein L34. |
| HOP002661 | 10 | 1 | MM2_31.PE30 RL12_MOUSE 60S ribosomal protein L12. |
| HOP002538 | 10 | 1 | MM19_6.PE11 EF1G_MOUSE Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma). |
| HOP002422 | 10 | 1 | MM17_25.PE39 SFR3_HUMAN Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor SRP20) (X16 protein). |
| HOP002157 | 10 | 1 | MM12_109.PE13 HV05_MOUSE Ig heavy chain V region 3 precursor. |
| HOP001987 | 10 | 1 | MM10_128.PE1 Q8VFI2 Olfactory receptor MOR110-5 (Olfactory receptor GA_x6K02T2PULF-11417610-11416669). |
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