Blast parameters
-G
‹
n
›
Cost to open a gap [Integer]
-E
‹
n
›
Cost to extend a gap [Integer]
-W
‹
n
›
Word size [Integer]
Limited values for gap existence and extension are supported for these three programs. Some supported and suggested values are:
Existence
Extension
10
1
10
2
11
1
8
2
9
2
Default options:
-G 11 -E 1 -W 3
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