# Your DBGWAS 0.4.8 results

-strains = /data/Datasets/strains.Cipro.txt -output = /data/Projects/00_DBGWAS_paper/output/Saureus_Cipro_SFF15 -pt_db = /data/Datasets/annotation_DBs/uniprot_sprot_bacteria.fasta -nc_db = /data/Datasets/annotation_DBs/DBGWAS_merged_ResDB.fasta -SFF = 15 -skip2 -k = 31 -nh = 5 -maf = 0.01 -nb-cores = 1 -verbose = 1

Re-run DBGWAS with a newick tree file (-newick parameter) to view figures on lineage effect.

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