Your DBGWAS 0.5.2 results
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-nc-db = DBGWAS/bin/Resistance_DB_for_DBGWAS.fasta -pt-db = DBGWAS/bin/uniprot_sprot_bacteria_for_DBGWAS.fasta -output = output/ -skip2 -nb-cores = 8 -strains = empty_strain_file -k = 31 -SFF = 100 -nh = 5 -maf = 0.01 -GEMMA-path = <DBGWAS_lib>/gemma.0.93b -Blast-path = <DBGWAS_lib>/ -phantomjs-path = <DBGWAS_lib>/phantomjs -Rscript-path = Rscript -verbose = 1
Show figures on lineage effect
Re-run DBGWAS with a newick tree file (-newick parameter) to view figures on lineage effect.
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