Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
Genome size (bp): 4646332
Number of genes 4226
Oriloc predictions: Origin 3677 kb Terminus 1558 kb
Worning et al., 2006: Origin 3714 kb Terminus 1554 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3710.735 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3295.96 kb, 3757.39 kb
Consensus predictions: Origin 3677 kb Terminus 1558 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 792 | NA | 1609 |
| 1614 | NA | 3635 | |
| GC-skew reverse | 2777 | NA | 1599 |
| 3828 | NA | 3676 | |
| AT-skew forward | 1150 | NA | 2503 |
| 1645 | NA | 3721 | |
| AT-skew reverse | 2692 | NA | 1400 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 792 (1608.6995 kb) | leading | 0.091 |
| 793 (1609.03 kb) | 1614 (3634.942 kb) | lagging | -0.011 | |
| 1615 (3639.504 kb) | 2097 (4646.305 kb) | leading | 0.073 | |
| GC-skew reverse | 2098 (0 kb) | 2777 (1598.8745 kb) | leading | 0.004 |
| 2778 (1601.6445 kb) | 3828 (3676.3485 kb) | lagging | -0.087 | |
| 3829 (3679.2945 kb) | 4226 (4646.305 kb) | leading | 0.008 | |
| AT-skew forward | 1 (0 kb) | 1150 (2503.0625 kb) | NA | -0.177 |
| 1151 (2505.82 kb) | 1645 (3721.303 kb) | lagging | -0.161 | |
| 1646 (3722.9305 kb) | 2097 (4646.305 kb) | leading | -0.214 | |
| AT-skew reverse | 2098 (0 kb) | 2692 (1400.3145 kb) | leading | 0.178 |
| 2693 (1401.2205 kb) | 4226 (4646.305 kb) | NA | 0.191 |