Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; typhus group.
Genome size (bp): 1111523
Number of genes 833
Oriloc predictions: Origin 0 kb Terminus 627 kb
Worning et al., 2006: Origin 1105 kb Terminus 581 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1111.377 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 757.56 kb
Consensus predictions: Origin 0 kb Terminus 627 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 85 | NA | 154 |
| 92 | NA | 159 | |
| 260 | NA | 535 | |
| 298 | NA | 626 | |
| GC-skew reverse | 600 | NA | 587 |
| AT-skew forward | 36 | NA | 73 |
| 273 | NA | 569 | |
| AT-skew reverse | 619 | NA | 637 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 85 (153.5765 kb) | leading | 0.286 |
| 86 (154.0815 kb) | 92 (159.323 kb) | leading | 0.545 | |
| 93 (160.2215 kb) | 260 (534.8035 kb) | leading | 0.303 | |
| 261 (537.105 kb) | 298 (626.427 kb) | leading | 0.148 | |
| 299 (628.223 kb) | 427 (1111.139 kb) | lagging | 0.008 | |
| GC-skew reverse | 428 (0 kb) | 600 (587.19 kb) | leading | 0.013 |
| 601 (588.3675 kb) | 833 (1111.139 kb) | lagging | -0.284 | |
| AT-skew forward | 1 (0 kb) | 36 (73.07 kb) | leading | -0.051 |
| 37 (74.836 kb) | 273 (569.382 kb) | leading | -0.1 | |
| 274 (570.906 kb) | 427 (1111.139 kb) | NA | -0.026 | |
| AT-skew reverse | 428 (0 kb) | 619 (637.288 kb) | leading | 0.016 |
| 620 (640.2915 kb) | 833 (1111.139 kb) | lagging | 0.074 |
More G than C on the leading strand for replication.