Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.
Genome size (bp): 3814139
Number of genes 3445
Oriloc predictions: Origin 7 kb Terminus 1864 kb
Worning et al., 2006: Origin 2 kb Terminus 1896 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1279.286 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.7 kb, 1166.41 kb
Consensus predictions: Origin 0 kb Terminus 1864 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1121 | NA | 1879 |
| GC-skew reverse | 2277 | NA | 1857 |
| 3082 | NA | 3145 | |
| 3145 | NA | 3258 | |
| AT-skew forward | 1108 | NA | 1854 |
| 1292 | NA | 2567 | |
| AT-skew reverse | 2275 | NA | 1849 |
| 3185 | NA | 3302 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1121 (1879.253 kb) | leading | -0.078 |
| 1122 (1881.159 kb) | 1700 (3813.332 kb) | lagging | -0.154 | |
| GC-skew reverse | 1701 (0 kb) | 2277 (1857.2335 kb) | leading | 0.156 |
| 2278 (1862.06 kb) | 3082 (3144.7995 kb) | lagging | 0.084 | |
| 3083 (3145.151 kb) | 3145 (3258.412 kb) | lagging | 0.156 | |
| 3146 (3259.2 kb) | 3445 (3813.332 kb) | lagging | 0.083 | |
| AT-skew forward | 1 (0 kb) | 1108 (1853.6475 kb) | leading | -0.235 |
| 1109 (1856.167 kb) | 1292 (2567.212 kb) | lagging | -0.061 | |
| 1293 (2567.597 kb) | 1700 (3813.332 kb) | lagging | -0.005 | |
| AT-skew reverse | 1701 (0 kb) | 2275 (1849.4255 kb) | leading | -0.001 |
| 2276 (1853.5985 kb) | 3185 (3302.09 kb) | lagging | 0.225 | |
| 3186 (3302.7155 kb) | 3445 (3813.332 kb) | lagging | 0.25 |
More G than C on the leading strand for replication.