Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.
Genome size (bp): 2841581
Number of genes 2715
Oriloc predictions: Origin 0 kb Terminus 1463 kb
Worning et al., 2006: Origin 0 kb Terminus 1479 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2841.493 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 318.11 kb
Consensus predictions: Origin 0 kb Terminus 1463 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 812 | 0 | 1465 |
| GC-skew reverse | 1997 | 0 | 1478 |
| AT-skew forward | 820 | 0 | 1473 |
| AT-skew reverse | 2000 | 0 | 1481 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 812 (1464.6615 kb) | leading | -0.09 |
| 813 (1465.4655 kb) | 1367 (2841.173 kb) | lagging | -0.179 | |
| GC-skew reverse | 1368 (0 kb) | 1997 (1478.482 kb) | leading | 0.125 |
| 1998 (1479.264 kb) | 2715 (2841.173 kb) | lagging | 0.04 | |
| AT-skew forward | 1 (0 kb) | 820 (1473.1535 kb) | leading | -0.307 |
| 821 (1482.158 kb) | 1367 (2841.173 kb) | lagging | -0.186 | |
| AT-skew reverse | 1368 (0 kb) | 2000 (1480.5975 kb) | leading | 0.254 |
| 2001 (1482.1665 kb) | 2715 (2841.173 kb) | lagging | 0.367 |
More G than C on the leading strand for replication.