Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.
Genome size (bp): 2841490
Number of genes 2785
Oriloc predictions: Origin 0 kb Terminus 1469 kb
Worning et al., 2006: Origin 0 kb Terminus 1479 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 0.114 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 318.33 kb
Consensus predictions: Origin 0 kb Terminus 1469 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 818 | NA | 1467 |
| GC-skew reverse | 2069 | NA | 1526 |
| AT-skew forward | 822 | NA | 1492 |
| AT-skew reverse | 2046 | NA | 1484 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 818 (1467.27 kb) | leading | -0.099 |
| 819 (1468.11 kb) | 1398 (2841.284 kb) | lagging | -0.181 | |
| GC-skew reverse | 1399 (0 kb) | 2069 (1526.3505 kb) | leading | 0.129 |
| 2070 (1527.2945 kb) | 2785 (2841.284 kb) | lagging | 0.043 | |
| AT-skew forward | 1 (0 kb) | 822 (1492.1715 kb) | leading | -0.31 |
| 823 (1493.571 kb) | 1398 (2841.284 kb) | lagging | -0.191 | |
| AT-skew reverse | 1399 (0 kb) | 2046 (1484.304 kb) | leading | 0.259 |
| 2047 (1485.498 kb) | 2785 (2841.284 kb) | lagging | 0.368 |
More G than C on the leading strand for replication.