Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Genome size (bp): 6397126
Number of genes 5470
Oriloc predictions: Origin 318 kb Terminus 3213 kb
Worning et al., 2006: Origin 229 kb Terminus 3208 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 6271.36 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.11 kb
Consensus predictions: Origin 318 kb Terminus 3213 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1052 | NA | 2155 |
| 1546 | NA | 3215 | |
| 2456 | NA | 5481 | |
| GC-skew reverse | 4082 | NA | 3115 |
| AT-skew forward | 147 | NA | 316 |
| 1529 | NA | 3180 | |
| 2206 | NA | 4839 | |
| AT-skew reverse | 4104 | NA | 3246 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1052 (2155.1855 kb) | leading | -0.025 |
| 1053 (2156.1895 kb) | 1546 (3214.8705 kb) | leading | -0.012 | |
| 1547 (3215.591 kb) | 2456 (5480.7305 kb) | lagging | -0.089 | |
| 2457 (5481.251 kb) | 2849 (6396.881 kb) | lagging | -0.076 | |
| GC-skew reverse | 2850 (0 kb) | 4082 (3114.8885 kb) | leading | 0.078 |
| 4083 (3121.764 kb) | 5470 (6396.881 kb) | lagging | 0.014 | |
| AT-skew forward | 1 (0 kb) | 147 (316.483 kb) | lagging | -0.152 |
| 148 (318.08 kb) | 1529 (3180.168 kb) | leading | -0.262 | |
| 1530 (3181.319 kb) | 2206 (4839.2305 kb) | lagging | -0.123 | |
| 2207 (4841.0115 kb) | 2849 (6396.881 kb) | lagging | -0.096 | |
| AT-skew reverse | 2850 (0 kb) | 4104 (3246.0015 kb) | leading | 0.118 |
| 4105 (3247.286 kb) | 5470 (6396.881 kb) | lagging | 0.256 |
More G than C on the leading strand for replication.