Rearranged Oriloc output example: Previous Index Next




Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.
Genome size (bp): 288050
Number of genes 281
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 231 kb Terminus 124 kb
Position(s) of the ORC/Cdc6 gene(s): 7.45 kb, 50.84 kb
Consensus predictions: Origin NA Terminus NA
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward680.07112
840.05667138
GC-skew reverse2120.21156
2250.14177
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)68 (112.3315 kb) NA-0.12
69 (113.0095 kb)84 (138.406 kb) NA0.02
85 (144.5935 kb)144 (288.019 kb) NA-0.126
GC-skew reverse 145 (0 kb)212 (156.14 kb) NA0.1
213 (158.116 kb)225 (176.749 kb) NA0.007
226 (181.795 kb)281 (288.019 kb) NA0.12