Rearranged Oriloc output example: Previous Index Next




Bacteria; Firmicutes; Mollicutes; Mycoplasmataceae; Mycoplasma.
Genome size (bp): 799476
Number of genes 672
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 292 kb Terminus 52 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 793.728 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.74 kb
Consensus predictions: Origin NA Terminus NA
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward180NA514
GC-skew reverse441NA314
AT-skew forward129NA378
AT-skew reverse451NA359
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)180 (513.876 kb) NA-0.25
181 (516.1825 kb)267 (799.473 kb) NA-0.265
GC-skew reverse 268 (0 kb)441 (313.8185 kb) NA0.303
442 (321.017 kb)672 (799.473 kb) NA0.25
AT-skew forward 1 (0 kb)129 (377.8695 kb) NA0.022
130 (378.9775 kb)267 (799.473 kb) NA-0.004
AT-skew reverse 268 (0 kb)451 (358.5745 kb) NA-0.046
452 (359.5135 kb)672 (799.473 kb) NA-0.02